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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-11 02:50:24 +00:00
freebsd-ports/biology
Sylvio Cesar Teixeira b5dabfb20d - Update to 3.1.4
PR:		ports/146411
Submitted by:	Glen Barber <glen.j.barber@gmail.com> (maintainer)
2010-05-09 13:59:34 +00:00
..
adun - update to 0.81 2010-04-14 05:01:48 +00:00
ariadne
artemis
avida Mark various ports as broken or ignore on powerpc. 2010-04-01 05:16:19 +00:00
babel Mark various ports as broken or ignore on powerpc. 2010-04-01 05:16:19 +00:00
belvu
biococoa
biojava
blast - SUB_FILES += pkg-message 2010-01-09 23:51:26 +00:00
blat
boinc-simap - update to 1.4.1 2010-03-28 06:47:48 +00:00
chemeq
clustalw - Fix fetch error 2009-12-27 03:05:03 +00:00
consed
crimap - actually remove old patch 2010-01-17 00:16:34 +00:00
crux Update to Crux 1.2.0. 2009-09-19 17:58:13 +00:00
distribfold
dna-qc For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
dotter - Removed BROKEN because file fetches and checksums correctly 2010-04-28 22:37:11 +00:00
embassy - Update to 6.2.0 2010-04-07 01:21:36 +00:00
emboss - Update to 6.2.0 2010-04-07 01:21:36 +00:00
fasta Mark various ports as broken or ignore on powerpc. 2010-04-01 05:16:19 +00:00
fasta3
fastdnaml
finchtv
fluctuate For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
garlic
genpak - update to 1.4.1 2010-03-28 06:47:48 +00:00
gff2ps
gmap
gperiodic - update to 1.4.1 2010-03-28 06:47:48 +00:00
grappa
hmmer
iolib
jalview
kinemage
L-Breeder - update to 1.4.1 2010-03-28 06:47:48 +00:00
lagan
lamarc - Reset more ports I don't use anymore 2010-02-10 21:47:48 +00:00
libgenome
libsbml - Mark MAKE_JOBS_UNSAFE 2009-11-20 22:53:09 +00:00
linux-foldingathome
lsysexp - update to 1.4.1 2010-03-28 06:47:48 +00:00
mafft
mapm3 - Mark MAKE_JOBS_UNSAFE 2009-11-20 22:53:09 +00:00
migrate - Update to 3.1.4 2010-05-09 13:59:34 +00:00
molden Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
mopac - Update to 7.1.11 2009-12-22 11:25:15 +00:00
mrbayes
mummer - Update to 3.22 2010-03-21 17:18:20 +00:00
muscle
ncbi-toolkit - use $SUB_FILES to dynamically adjust pkg-message 2010-01-31 03:42:20 +00:00
njplot
ortep3 For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
p5-AcePerl - Remove unneeded dependencies which is in perl-5.8.9 dist 2010-01-29 14:52:21 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - update to 1.4.1 2010-03-28 06:47:48 +00:00
p5-Bio-Das-Lite - Update to 2.03 2010-04-02 09:06:35 +00:00
p5-Bio-Glite - Remove unneeded dependencies which is in perl-5.8.9 dist 2010-01-29 14:52:21 +00:00
p5-Bio-Graphics - Update to 2.04 2010-04-20 08:48:47 +00:00
p5-Bio-MAGETAB - Update to 1.00 2010-05-08 08:35:32 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo - update to 1.4.1 2010-03-28 06:47:48 +00:00
p5-Bio-SCF - Update to 1.03 2010-01-09 01:21:21 +00:00
p5-bioperl - update to 1.4.1 2010-03-28 06:47:48 +00:00
p5-bioperl-run - update to 1.4.1 2010-03-28 06:47:48 +00:00
paml - Update to 4.4a 2010-04-20 08:42:04 +00:00
phd2fasta
phrap
phred
phylip For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
phyml
platon Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
povchem - update to 1.4.1 2010-03-28 06:47:48 +00:00
primer3 - Update to 1.1.4 2009-12-18 02:55:57 +00:00
protomol - update to 1.4.1 2010-03-28 06:47:48 +00:00
psi88 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
py-biopython - Update to 1.53 2010-01-06 00:29:25 +00:00
pycogent - Update to 1.4 2009-12-17 06:51:53 +00:00
pyfasta - Update to 0.3.9 2010-03-19 08:32:48 +00:00
pymol - update to 1.4.1 2010-03-28 06:47:48 +00:00
python-nexus - Update to 0.7 2010-02-24 01:30:46 +00:00
rasmol
recombine For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
ruby-bio
seaview - update to 1.4.1 2010-03-28 06:47:48 +00:00
seqio For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
sim4
ssaha
t_coffee
tinker Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
treepuzzle
treeviewx - update to 1.4.1 2010-03-28 06:47:48 +00:00
tRNAscan-SE
velvet Velvet is a de novo genomic assembler specially designed for short read 2009-11-07 01:23:59 +00:00
wise - SBU_FILES += pkg-message 2010-01-08 01:30:20 +00:00
xdrawchem - update to 1.4.1 2010-03-28 06:47:48 +00:00
xmolwt
Makefile p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML 2010-03-01 09:16:25 +00:00