Martin Wilke 043ce69d39 LibSBML is an open-source programming library to help you read, write, ... manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with example programs), but rather a library you can embed in your own applications. LibSBML understands all Levels and Versions of SBML, as well as the SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in ISO C and C++ but can be used from all the languages listed in the right-hand box. WWW: http://www.sbml.org/ PR: ports/135022 Submitted by: Wen Heping <wenheping at gmail.com>		2009-05-28 23:36:10 +00:00
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adun	- fix build with gnustep-make-2.2.0	2009-05-21 12:00:17 +00:00
ariadne
artemis
avida	bump PORTREVISION after cmake update	2009-03-24 19:13:32 +00:00
babel
belvu
biococoa	- add LICENSE:	2009-01-16 16:01:05 +00:00
biojava	- Update to 1.7	2009-05-01 09:33:42 +00:00
blast	- Remove conditional checks relevant only on FreeBSD 5.x and older	2009-01-05 17:27:29 +00:00
blat
boinc-simap	- Remove conditional checks relevant only on FreeBSD 5.x and older	2009-01-05 17:27:29 +00:00
chemeq
clustalw
consed	Welcome to the new linux ports infrastructure which allows using	2009-03-19 17:28:51 +00:00
crimap
distribfold
dna-qc
dotter
embassy	- Mark BROKEN does not compile	2009-03-23 21:56:39 +00:00
emboss	- Update to 0.1.24	2009-03-14 15:17:06 +00:00
fasta	- Update download location	2009-01-31 22:45:38 +00:00
fasta3	- Add forgotten patch	2009-02-23 16:13:19 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer	- Update download locations, update WWW	2009-02-01 08:17:14 +00:00
jalview
kinemage
L-Breeder	Reset dyeske@gmail.com at his request.	2009-02-02 23:44:01 +00:00
lagan
lamarc	- Mark most of my ports MAKE_JOBS_SAFE=yes	2009-05-16 06:27:56 +00:00
libgenome
libsbml	LibSBML is an open-source programming library to help you read, write,	2009-05-28 23:36:10 +00:00
linux-foldingathome
lsysexp	Reset dyeske@gmail.com at his request.	2009-02-02 23:44:01 +00:00
mafft	- Update download locations, update WWW	2009-02-04 03:31:00 +00:00
mapm3
migrate	- Update to 3.0.3	2009-01-14 16:00:34 +00:00
molden	- Unbreak distinfo after portrevision bump	2009-01-09 19:31:49 +00:00
mopac
mrbayes	Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from	2009-05-12 11:28:17 +00:00
mummer
muscle
ncbi-toolkit	- Update to 2009.03.01	2009-03-28 16:59:39 +00:00
njplot
ortep3	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
p5-AcePerl	- Mark most of my ports MAKE_JOBS_SAFE=yes	2009-05-16 06:27:56 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- update to 1.10	2008-12-11 05:19:12 +00:00
p5-Bio-Glite	Bio::Glite is an interface to G-language Genome Analysis Environment	2009-04-02 18:24:59 +00:00
p5-Bio-Graphics	- Update to 1.94	2009-05-01 14:54:30 +00:00
p5-Bio-Phylo
p5-bioperl	Remove variable PERL_VER from the ports tree at all - because	2009-03-05 17:56:24 +00:00
p5-bioperl-devel	- Mark DEPRECATED (no longer under development)	2009-03-19 19:29:34 +00:00
p5-bioperl-run	- Update to 1.6.1	2009-03-19 20:54:05 +00:00
p5-bioperl-run-devel	- Mark DEPRECATED (no longer under development)	2009-03-19 19:29:34 +00:00
paml	- Update to 4.2b	2009-03-02 19:02:48 +00:00
phd2fasta
phrap
phred
phylip	- Update X.org ports to 7.4+ (few ports are more recent than the katamari).	2009-01-23 16:28:36 +00:00
platon	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
povchem
primer3
protomol	- Update X.org ports to 7.4+ (few ports are more recent than the katamari).	2009-01-23 16:28:36 +00:00
psi88	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
py-biopython
pymol	- Update X.org ports to 7.4+ (few ports are more recent than the katamari).	2009-01-23 16:28:36 +00:00
rasmol
recombine
ruby-bio
seaview
seqio
sim4
ssaha
t_coffee
tinker	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
treepuzzle
treeviewx
tRNAscan-SE
wise
xdrawchem
xmolwt
Makefile	LibSBML is an open-source programming library to help you read, write,	2009-05-28 23:36:10 +00:00