Jason Evans 91fb724efd Change CONFIGURE_ENV --> USE_CSTD. [1] ... Add missing pkg-plist entry for Parsing.so. [2] Change RUN_DEPENDS --> LIB_DEPENDS for optional math/atlas dependency. Submitted by: [1] erwin Reported by: [2] QAT		2009-06-10 01:25:02 +00:00
..
adun	- fix build for custom LOCALBASE in UL subdir	2009-06-02 02:33:05 +00:00
ariadne
artemis
avida	bump PORTREVISION after cmake update	2009-03-24 19:13:32 +00:00
babel
belvu
biococoa	- add LICENSE:	2009-01-16 16:01:05 +00:00
biojava	- Update to 1.7	2009-05-01 09:33:42 +00:00
blast	- Remove conditional checks relevant only on FreeBSD 5.x and older	2009-01-05 17:27:29 +00:00
blat	- Remove USE_GCC where it can be satisfied with base compiler on following	2008-07-25 14:34:52 +00:00
boinc-simap	- Remove conditional checks relevant only on FreeBSD 5.x and older	2009-01-05 17:27:29 +00:00
chemeq
clustalw
consed	Welcome to the new linux ports infrastructure which allows using	2009-03-19 17:28:51 +00:00
crimap
crux	Change CONFIGURE_ENV --> USE_CSTD. [1]	2009-06-10 01:25:02 +00:00
distribfold
dna-qc
dotter
embassy	- Mark BROKEN does not compile	2009-03-23 21:56:39 +00:00
emboss	- Update to 0.1.24	2009-03-14 15:17:06 +00:00
fasta	- Update download location	2009-01-31 22:45:38 +00:00
fasta3	- Update to 35.4.7 [1]	2009-06-09 07:53:37 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak	- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV	2008-07-25 09:08:42 +00:00
gff2ps
gmap	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
gperiodic
grappa
hmmer	- Update download locations, update WWW	2009-02-01 08:17:14 +00:00
jalview
kinemage
L-Breeder	Reset dyeske@gmail.com at his request.	2009-02-02 23:44:01 +00:00
lagan	- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV	2008-07-25 09:08:42 +00:00
lamarc	- Mark most of my ports MAKE_JOBS_SAFE=yes	2009-05-16 06:27:56 +00:00
libgenome	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
libsbml	LibSBML is an open-source programming library to help you read, write,	2009-05-28 23:36:10 +00:00
linux-foldingathome
lsysexp	Reset dyeske@gmail.com at his request.	2009-02-02 23:44:01 +00:00
mafft	- Update download locations, update WWW	2009-02-04 03:31:00 +00:00
mapm3
migrate	- Update to 3.0.3	2009-01-14 16:00:34 +00:00
molden	- Unbreak distinfo after portrevision bump	2009-01-09 19:31:49 +00:00
mopac	Add -lf2c, this is the correct dependency. Bump portrevision.	2008-08-22 22:20:05 +00:00
mrbayes	Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from	2009-05-12 11:28:17 +00:00
mummer
muscle
ncbi-toolkit	- Update to 2009.03.01	2009-03-28 16:59:39 +00:00
njplot	Convert most of remaining ports that depend on xorg-libraries to	2009-06-09 15:33:28 +00:00
ortep3	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
p5-AcePerl	- Mark most of my ports MAKE_JOBS_SAFE=yes	2009-05-16 06:27:56 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- Update to 1.11	2009-06-08 09:30:07 +00:00
p5-Bio-Glite	Bio::Glite is an interface to G-language Genome Analysis Environment	2009-04-02 18:24:59 +00:00
p5-Bio-Graphics	- Update to 1.95	2009-06-02 21:34:06 +00:00
p5-Bio-Phylo
p5-bioperl	Remove variable PERL_VER from the ports tree at all - because	2009-03-05 17:56:24 +00:00
p5-bioperl-run	- Update to 1.6.1	2009-03-19 20:54:05 +00:00
paml	- Update to 4.2b	2009-03-02 19:02:48 +00:00
phd2fasta
phrap
phred
phylip	- Update X.org ports to 7.4+ (few ports are more recent than the katamari).	2009-01-23 16:28:36 +00:00
platon	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
povchem
primer3
protomol	- Update X.org ports to 7.4+ (few ports are more recent than the katamari).	2009-01-23 16:28:36 +00:00
psi88	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
py-biopython	- Update to 1.48	2008-10-11 15:26:33 +00:00
pymol	- Update lang/python26 and make Python 2.6.2 to the default Python version	2009-06-08 22:30:55 +00:00
rasmol	Convert most of remaining ports that depend on xorg-libraries to	2009-06-09 15:33:28 +00:00
recombine
ruby-bio
seaview
seqio
sim4
ssaha
t_coffee	- Respect PORTDOCS/PORTEXAMPLES	2008-09-09 13:43:15 +00:00
tinker	Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.	2009-01-07 16:34:27 +00:00
treepuzzle	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
treeviewx
tRNAscan-SE
wise
xdrawchem	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
xmolwt
Makefile	Add the biology/crux port.	2009-06-08 23:49:59 +00:00