2010-06-25 16:20:39 +00:00
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;;; ob-tangle.el --- extract source code from org-mode files
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2009-06-15 01:30:29 +00:00
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2010-06-25 16:20:39 +00:00
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;; Copyright (C) 2009, 2010 Free Software Foundation, Inc.
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2009-06-15 01:30:29 +00:00
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2009-10-29 23:03:43 +00:00
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;; Author: Eric Schulte
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2009-06-15 01:30:29 +00:00
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;; Keywords: literate programming, reproducible research
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;; Homepage: http://orgmode.org
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2010-07-19 06:33:24 +00:00
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;; Version: 7.01trans
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2009-06-15 01:30:29 +00:00
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2010-06-25 16:20:39 +00:00
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;; This file is part of GNU Emacs.
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2009-06-15 01:30:29 +00:00
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2010-06-25 16:20:39 +00:00
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;; GNU Emacs is free software: you can redistribute it and/or modify
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2009-06-15 01:30:29 +00:00
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;; it under the terms of the GNU General Public License as published by
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2010-06-25 16:20:39 +00:00
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;; the Free Software Foundation, either version 3 of the License, or
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;; (at your option) any later version.
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;; GNU Emacs is distributed in the hope that it will be useful,
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2009-06-15 01:30:29 +00:00
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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2010-06-25 16:20:39 +00:00
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2009-06-15 01:30:29 +00:00
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;; You should have received a copy of the GNU General Public License
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2010-06-25 16:20:39 +00:00
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;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
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2009-06-15 01:30:29 +00:00
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;;; Commentary:
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;; Extract the code from source blocks out into raw source-code files.
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;;; Code:
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2010-06-11 23:02:42 +00:00
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(require 'ob)
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2010-06-23 18:24:33 +00:00
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(require 'org-src)
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2010-06-13 01:32:23 +00:00
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(eval-when-compile
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(require 'cl))
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2009-06-15 01:30:29 +00:00
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2010-06-23 18:24:33 +00:00
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(declare-function org-link-escape "org" (text &optional table))
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2010-07-12 23:48:05 +00:00
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(declare-function org-heading-components "org" ())
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2010-06-23 18:24:33 +00:00
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2010-06-17 16:01:24 +00:00
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(defcustom org-babel-tangle-lang-exts
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'(("emacs-lisp" . "el"))
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"Alist mapping languages to their file extensions.
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The key is the language name, the value is the string that should
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be inserted as the extension commonly used to identify files
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written in this language. If no entry is found in this list,
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then the name of the language is used."
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:group 'org-babel-tangle
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:type '(repeat
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(cons
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(string "Language name")
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(string "File Extension"))))
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2010-05-27 22:32:10 +00:00
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2010-07-08 18:53:51 +00:00
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(defcustom org-babel-post-tangle-hook nil
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"Hook run in code files tangled by `org-babel-tangle'."
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:group 'org-babel
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:type 'hook)
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2010-09-03 13:51:13 +00:00
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(defcustom org-babel-pre-tangle-hook '(save-buffer)
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"Hook run at the beginning of `org-babel-tangle'."
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:group 'org-babel
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:type 'hook)
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2010-07-28 13:34:08 +00:00
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(defun org-babel-find-file-noselect-refresh (file)
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"Find file ensuring that the latest changes on disk are
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represented in the file."
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(find-file-noselect file)
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(with-current-buffer (get-file-buffer file)
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(revert-buffer t t t)))
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2010-07-16 22:55:40 +00:00
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(defmacro org-babel-with-temp-filebuffer (file &rest body)
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"Open FILE into a temporary buffer execute BODY there like
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`progn', then kill the FILE buffer returning the result of
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evaluating BODY."
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(declare (indent 1))
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(let ((temp-result (make-symbol "temp-result"))
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2010-07-28 13:34:08 +00:00
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(temp-file (make-symbol "temp-file"))
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2010-07-29 00:45:34 +00:00
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(visited-p (make-symbol "visited-p")))
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`(let (,temp-result ,temp-file
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(,visited-p (get-file-buffer ,file)))
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2010-07-28 13:34:08 +00:00
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(org-babel-find-file-noselect-refresh ,file)
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(setf ,temp-file (get-file-buffer ,file))
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(with-current-buffer ,temp-file
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(setf ,temp-result (progn ,@body)))
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(unless ,visited-p (kill-buffer ,temp-file))
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2010-07-16 22:55:40 +00:00
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,temp-result)))
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2010-06-23 18:24:33 +00:00
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;;;###autoload
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2009-07-15 01:29:28 +00:00
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(defun org-babel-load-file (file)
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2010-07-13 23:20:08 +00:00
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"Load Emacs Lisp source code blocks in the Org-mode FILE.
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This function exports the source code using
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`org-babel-tangle' and then loads the resulting file using
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`load-file'."
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2009-07-15 03:16:51 +00:00
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(flet ((age (file)
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2010-06-13 01:50:05 +00:00
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(float-time
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2009-07-15 03:16:51 +00:00
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(time-subtract (current-time)
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2010-06-13 01:26:08 +00:00
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(nth 5 (or (file-attributes (file-truename file))
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2010-02-08 20:17:06 +00:00
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(file-attributes file)))))))
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2009-07-30 14:57:26 +00:00
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(let* ((base-name (file-name-sans-extension file))
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(exported-file (concat base-name ".el")))
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;; tangle if the org-mode file is newer than the elisp file
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2010-06-02 12:52:30 +00:00
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(unless (and (file-exists-p exported-file)
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(> (age file) (age exported-file)))
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2010-03-18 18:30:54 +00:00
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(org-babel-tangle-file file exported-file "emacs-lisp"))
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2009-07-30 14:57:26 +00:00
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(load-file exported-file)
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(message "loaded %s" exported-file))))
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2010-06-23 18:24:33 +00:00
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;;;###autoload
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2009-07-30 14:57:26 +00:00
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(defun org-babel-tangle-file (file &optional target-file lang)
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2010-07-13 23:20:08 +00:00
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"Extract the bodies of source code blocks in FILE.
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Source code blocks are extracted with `org-babel-tangle'.
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Optional argument TARGET-FILE can be used to specify a default
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export file for all source blocks. Optional argument LANG can be
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used to limit the exported source code blocks by language."
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2009-10-20 14:17:42 +00:00
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(interactive "fFile to tangle: \nP")
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2010-06-02 13:18:36 +00:00
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(let ((visited-p (get-file-buffer (expand-file-name file)))
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to-be-removed)
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(save-window-excursion
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(find-file file)
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(setq to-be-removed (current-buffer))
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(org-babel-tangle target-file lang))
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(unless visited-p
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(kill-buffer to-be-removed))))
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2009-07-15 01:26:15 +00:00
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2010-04-12 05:54:31 +00:00
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(defun org-babel-tangle-publish (_ filename pub-dir)
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"Tangle FILENAME and place the results in PUB-DIR."
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(mapc (lambda (el) (copy-file el pub-dir t)) (org-babel-tangle-file filename)))
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2010-06-23 18:24:33 +00:00
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;;;###autoload
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2009-07-30 14:57:26 +00:00
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(defun org-babel-tangle (&optional target-file lang)
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2010-07-13 23:20:08 +00:00
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"Write code blocks to source-specific files.
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Extract the bodies of all source code blocks from the current
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2009-07-15 01:26:15 +00:00
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file into their own source-specific files. Optional argument
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2009-07-30 14:57:26 +00:00
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TARGET-FILE can be used to specify a default export file for all
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source blocks. Optional argument LANG can be used to limit the
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exported source code blocks by language."
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2009-06-15 22:35:11 +00:00
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(interactive)
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2010-09-03 13:51:13 +00:00
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(run-hooks 'org-babel-pre-tangle-hook)
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2009-06-27 18:58:13 +00:00
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(save-excursion
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2009-07-31 02:14:35 +00:00
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(let ((block-counter 0)
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2010-07-09 16:43:30 +00:00
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(org-babel-default-header-args
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(if target-file
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(org-babel-merge-params org-babel-default-header-args
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(list (cons :tangle target-file)))
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org-babel-default-header-args))
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2009-07-15 01:37:47 +00:00
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path-collector)
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2009-07-31 22:53:02 +00:00
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(mapc ;; map over all languages
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2009-06-27 18:58:13 +00:00
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(lambda (by-lang)
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(let* ((lang (car by-lang))
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2009-07-30 14:57:26 +00:00
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(specs (cdr by-lang))
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2010-06-17 16:01:24 +00:00
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(ext (or (cdr (assoc lang org-babel-tangle-lang-exts)) lang))
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2010-06-02 12:52:30 +00:00
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(lang-f (intern
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(concat
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(or (and (cdr (assoc lang org-src-lang-modes))
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(symbol-name
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(cdr (assoc lang org-src-lang-modes))))
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lang)
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"-mode")))
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2009-11-04 22:18:50 +00:00
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she-banged)
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2009-07-30 14:57:26 +00:00
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(mapc
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(lambda (spec)
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2010-02-06 02:04:50 +00:00
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(flet ((get-spec (name)
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2010-06-13 01:26:08 +00:00
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(cdr (assoc name (nth 2 spec)))))
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2010-02-06 02:04:50 +00:00
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(let* ((tangle (get-spec :tangle))
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2010-06-17 16:01:24 +00:00
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(she-bang ((lambda (sheb) (when (> (length sheb) 0) sheb))
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(get-spec :shebang)))
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2010-07-09 16:43:30 +00:00
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(base-name (cond
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((string= "yes" tangle)
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(file-name-sans-extension
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(buffer-file-name)))
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((string= "no" tangle) nil)
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((> (length tangle) 0) tangle)))
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2010-02-06 02:04:50 +00:00
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(file-name (when base-name
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2010-02-07 18:36:52 +00:00
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;; decide if we want to add ext to base-name
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2010-03-18 00:09:06 +00:00
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(if (and ext (string= "yes" tangle))
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2010-02-06 02:04:50 +00:00
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(concat base-name "." ext) base-name))))
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(when file-name
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;; delete any old versions of file
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(when (and (file-exists-p file-name)
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(not (member file-name path-collector)))
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(delete-file file-name))
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;; drop source-block to file
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(with-temp-buffer
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2010-07-08 18:53:51 +00:00
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(when (fboundp lang-f) (funcall lang-f))
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2010-02-06 02:04:50 +00:00
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(when (and she-bang (not (member file-name she-banged)))
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(insert (concat she-bang "\n"))
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(setq she-banged (cons file-name she-banged)))
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(org-babel-spec-to-string spec)
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2010-03-18 01:03:21 +00:00
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;; We avoid append-to-file as it does not work with tramp.
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(let ((content (buffer-string)))
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(with-temp-buffer
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(if (file-exists-p file-name)
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(insert-file-contents file-name))
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(goto-char (point-max))
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(insert content)
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(write-region nil nil file-name))))
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2010-05-26 02:01:20 +00:00
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;; if files contain she-bangs, then make the executable
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Use integer syntax for the MODE argument to #'set-file-modes
Hello!
We need this change to get org-mode compiling with recent XEmacs 21.5. On
previous 21.5 and current 21.4, the problem manifests itself at runtime, not
compile time, like so:
(set-file-modes "/tmp/aidan/foo.el" ?\755)
=> Wrong type argument: integerp, ?í
One old reason to go for the ?\755 syntax instead of the #o755 syntax under
GNU Emacs was to be that older versions of GNU Emacs didn’t support #o755,
but, to my knowledge, every released GNU Emacs since March 2000 has
supported the latter syntax.
Best,
Aidan Kehoe, the XEmacs project.
ChangeLog addition:
2010-08-21 Aidan Kehoe <kehoea@parhasard.net>
* ob-tangle.el (org-babel-tangle): Change the MODE argument to
#'set-file-modes to use integer, not character syntax, avoiding
compile problems with recent XEmacs.
2010-08-22 04:17:04 +00:00
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(when she-bang (set-file-modes file-name #o755))
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2010-02-06 02:04:50 +00:00
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;; update counter
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(setq block-counter (+ 1 block-counter))
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(add-to-list 'path-collector file-name)))))
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2009-07-30 14:57:26 +00:00
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specs)))
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2009-07-23 00:30:30 +00:00
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(org-babel-tangle-collect-blocks lang))
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2009-09-02 19:20:20 +00:00
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(message "tangled %d code block%s" block-counter
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(if (= block-counter 1) "" "s"))
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2010-07-08 18:53:51 +00:00
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;; run `org-babel-post-tangle-hook' in all tangled files
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(when org-babel-post-tangle-hook
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(mapc
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(lambda (file)
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2010-07-16 22:55:40 +00:00
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(org-babel-with-temp-filebuffer file
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2010-07-08 18:53:51 +00:00
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(run-hooks 'org-babel-post-tangle-hook)))
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path-collector))
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2009-07-15 01:37:47 +00:00
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path-collector)))
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2009-06-26 18:43:50 +00:00
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2009-08-20 22:32:57 +00:00
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(defun org-babel-tangle-clean ()
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2010-07-13 23:20:08 +00:00
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"Remove comments inserted by `org-babel-tangle'.
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Call this function inside of a source-code file generated by
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2009-08-20 22:32:57 +00:00
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`org-babel-tangle' to remove all comments inserted automatically
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by `org-babel-tangle'. Warning, this comment removes any lines
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containing constructs which resemble org-mode file links or noweb
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references."
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(interactive)
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(goto-char (point-min))
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(while (or (re-search-forward "\\[\\[file:.*\\]\\[.*\\]\\]" nil t)
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(re-search-forward "<<[^[:space:]]*>>" nil t))
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Xemacs incompatibilities
Carsten Dominik <carsten.dominik@gmail.com> writes:
> On May 17, 2010, at 4:39 PM, Michael Sperber wrote:
>
>> In particular, fixing the require won't be enough: org-babel-python.el
>> uses `run-python' and interacts with the inferior Python, whereas
>> python-mode.el defines `py-shell'.
>>
>> Should I try to abstract over the differences?
>
> Yes, this would be much appreciated. (I think, Eric or Dan?)
OK, I've attached a patch that makes `org-babel-python' work on XEmacs.
Most of the issues are pure XEmacs issues. Notes:
- XEmacs doesn't have [[:digit:]] - I hope to rectify this in the
future, but it seems there's no downside in this particular case to
replacing by [0-9].
- XEmacs doesn't have `move-end-of-line', but does have `end-of-line'.
I don't understand the intent of having both of these, but the code
seems fine with `end-of-line'.
- It seems there are way too few `require's throughout org-babel. I
don't know if it's OK to add the ones I needed.
- `org-babel-python-evaluate' looked broken as-is: It doesn't use the
`body' argument properly, the result is (I think) processed in the
wrong order and not properly split into lines. I've fixed all these,
but a review is probably in order.
2010-05-24 19:22:50 +00:00
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(delete-region (save-excursion (beginning-of-line 1) (point))
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(save-excursion (end-of-line 1) (forward-char 1) (point)))))
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2009-08-20 22:32:57 +00:00
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2010-06-23 18:24:33 +00:00
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(defvar org-stored-links)
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2009-07-23 00:30:30 +00:00
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(defun org-babel-tangle-collect-blocks (&optional lang)
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2010-07-13 23:20:08 +00:00
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"Collect source blocks in the current Org-mode file.
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2009-07-30 14:57:26 +00:00
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Return an association list of source-code block specifications of
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the form used by `org-babel-spec-to-string' grouped by language.
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2009-07-15 01:26:15 +00:00
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Optional argument LANG can be used to limit the collected source
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code blocks by language."
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2010-07-12 23:48:05 +00:00
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(let ((block-counter 1) (current-heading "") blocks)
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2010-07-12 04:35:58 +00:00
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(org-babel-map-src-blocks (buffer-file-name)
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2010-07-12 23:48:05 +00:00
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((lambda (new-heading)
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(if (not (string= new-heading current-heading))
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(progn
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(setq block-counter 1)
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(setq current-heading new-heading))
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(setq block-counter (+ 1 block-counter))))
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(replace-regexp-in-string "[ \t]" "-"
|
2010-08-03 17:20:48 +00:00
|
|
|
(condition-case nil
|
|
|
|
(nth 4 (org-heading-components))
|
|
|
|
(error (buffer-file-name)))))
|
2009-06-28 00:25:01 +00:00
|
|
|
(let* ((link (progn (call-interactively 'org-store-link)
|
2010-06-02 12:52:30 +00:00
|
|
|
(org-babel-clean-text-properties
|
|
|
|
(car (pop org-stored-links)))))
|
2009-06-28 00:25:01 +00:00
|
|
|
(info (org-babel-get-src-block-info))
|
2010-06-13 01:26:08 +00:00
|
|
|
(source-name (intern (or (nth 4 info)
|
2010-07-12 23:48:05 +00:00
|
|
|
(format "%s:%d"
|
|
|
|
current-heading block-counter))))
|
2010-06-13 01:26:08 +00:00
|
|
|
(src-lang (nth 0 info))
|
2010-04-27 19:02:55 +00:00
|
|
|
(expand-cmd (intern (concat "org-babel-expand-body:" src-lang)))
|
2010-06-13 01:26:08 +00:00
|
|
|
(params (nth 2 info))
|
2009-07-30 14:57:26 +00:00
|
|
|
by-lang)
|
2010-06-02 12:52:30 +00:00
|
|
|
(unless (string= (cdr (assoc :tangle params)) "no") ;; skip
|
|
|
|
(unless (and lang (not (string= lang src-lang))) ;; limit by language
|
2009-07-30 14:57:26 +00:00
|
|
|
;; add the spec for this block to blocks under it's language
|
2009-07-23 00:30:30 +00:00
|
|
|
(setq by-lang (cdr (assoc src-lang blocks)))
|
|
|
|
(setq blocks (delq (assoc src-lang blocks) blocks))
|
2010-04-20 05:40:58 +00:00
|
|
|
(setq blocks
|
|
|
|
(cons
|
|
|
|
(cons src-lang
|
|
|
|
(cons (list link source-name params
|
2010-04-24 15:08:27 +00:00
|
|
|
((lambda (body)
|
|
|
|
(if (assoc :no-expand params)
|
|
|
|
body
|
|
|
|
(funcall
|
2010-06-02 12:52:30 +00:00
|
|
|
(if (fboundp expand-cmd)
|
|
|
|
expand-cmd
|
|
|
|
'org-babel-expand-body:generic)
|
2010-04-24 15:08:27 +00:00
|
|
|
body
|
|
|
|
params)))
|
2010-04-20 05:40:58 +00:00
|
|
|
(if (and (cdr (assoc :noweb params))
|
2010-06-02 12:52:30 +00:00
|
|
|
(string=
|
|
|
|
"yes"
|
|
|
|
(cdr (assoc :noweb params))))
|
|
|
|
(org-babel-expand-noweb-references
|
|
|
|
info)
|
2010-06-17 16:01:24 +00:00
|
|
|
(nth 1 info))))
|
2010-04-20 05:40:58 +00:00
|
|
|
by-lang)) blocks))))))
|
2009-08-03 17:00:42 +00:00
|
|
|
;; ensure blocks in the correct order
|
|
|
|
(setq blocks
|
2010-06-02 12:52:30 +00:00
|
|
|
(mapcar
|
|
|
|
(lambda (by-lang) (cons (car by-lang) (reverse (cdr by-lang))))
|
|
|
|
blocks))
|
2009-06-28 00:25:01 +00:00
|
|
|
blocks))
|
|
|
|
|
2009-06-26 03:17:21 +00:00
|
|
|
(defun org-babel-spec-to-string (spec)
|
2010-07-13 23:20:08 +00:00
|
|
|
"Insert SPEC into the current file.
|
|
|
|
Insert the source-code specified by SPEC into the current
|
2009-06-27 18:58:13 +00:00
|
|
|
source code file. This function uses `comment-region' which
|
|
|
|
assumes that the appropriate major-mode is set. SPEC has the
|
|
|
|
form
|
2009-06-26 19:12:23 +00:00
|
|
|
|
|
|
|
(link source-name params body)"
|
2010-06-15 00:50:28 +00:00
|
|
|
(let ((link (nth 0 spec))
|
|
|
|
(source-name (nth 1 spec))
|
|
|
|
(body (nth 3 spec))
|
2010-06-17 16:01:24 +00:00
|
|
|
(commentable (string= (cdr (assoc :comments (nth 2 spec))) "yes")))
|
2010-06-15 00:50:28 +00:00
|
|
|
(flet ((insert-comment (text)
|
2010-07-05 17:25:31 +00:00
|
|
|
(when commentable
|
2010-06-15 00:50:28 +00:00
|
|
|
(insert "\n")
|
|
|
|
(comment-region (point)
|
|
|
|
(progn (insert text) (point)))
|
|
|
|
(end-of-line nil)
|
|
|
|
(insert "\n"))))
|
2009-06-27 18:58:13 +00:00
|
|
|
(insert-comment (format "[[%s][%s]]" (org-link-escape link) source-name))
|
2010-06-07 18:46:11 +00:00
|
|
|
(insert (format "\n%s\n" (replace-regexp-in-string
|
|
|
|
"^," "" (org-babel-chomp body))))
|
2009-11-04 22:14:45 +00:00
|
|
|
(insert-comment (format "%s ends here" source-name)))))
|
2009-06-15 22:35:11 +00:00
|
|
|
|
2010-06-11 23:02:42 +00:00
|
|
|
(provide 'ob-tangle)
|
2010-06-25 16:20:39 +00:00
|
|
|
|
|
|
|
;; arch-tag: 413ced93-48f5-4216-86e4-3fc5df8c8f24
|
|
|
|
|
2010-06-11 23:02:42 +00:00
|
|
|
;;; ob-tangle.el ends here
|