;;; ob-python.el --- org-babel functions for python evaluation ;; Copyright (C) 2009, 2010 Free Software Foundation ;; Author: Eric Schulte, Dan Davison ;; Keywords: literate programming, reproducible research ;; Homepage: http://orgmode.org ;; Version: 7.3 ;; This file is part of GNU Emacs. ;; GNU Emacs is free software: you can redistribute it and/or modify ;; it under the terms of the GNU General Public License as published by ;; the Free Software Foundation, either version 3 of the License, or ;; (at your option) any later version. ;; GNU Emacs is distributed in the hope that it will be useful, ;; but WITHOUT ANY WARRANTY; without even the implied warranty of ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ;; GNU General Public License for more details. ;; You should have received a copy of the GNU General Public License ;; along with GNU Emacs. If not, see . ;;; Commentary: ;; Org-Babel support for evaluating python source code. ;;; Code: (require 'ob) (require 'ob-ref) (require 'ob-comint) (require 'ob-eval) (eval-when-compile (require 'cl)) (declare-function org-remove-indentation "org" ) (declare-function py-shell "ext:python-mode" (&optional argprompt)) (declare-function run-python "ext:python" (&optional cmd noshow new)) (add-to-list 'org-babel-tangle-lang-exts '("python" . "py")) (defvar org-babel-default-header-args:python '()) (defvar org-babel-python-command "python" "Name of command for executing python code.") (defvar org-babel-python-mode (if (featurep 'xemacs) 'python-mode 'python) "Preferred python mode for use in running python interactively.") (defvar org-src-preserve-indentation) (defun org-babel-execute:python (body params) "Execute a block of Python code with Babel. This function is called by `org-babel-execute-src-block'." (let* ((session (org-babel-python-initiate-session (cdr (assoc :session params)))) (result-params (cdr (assoc :result-params params))) (result-type (cdr (assoc :result-type params))) (return-val (when (and (eq result-type 'value) (not session)) (cdr (assoc :return params)))) (prefix (cdr (assoc :prefix params))) (full-body (org-babel-expand-body:generic (concat body (if return-val (format "return %s" return-val) "")) params (org-babel-variable-assignments:python params))) (result (org-babel-python-evaluate session full-body result-type result-params prefix))) (or (cdr (assoc :file params)) (org-babel-reassemble-table result (org-babel-pick-name (cdr (assoc :colname-names params)) (cdr (assoc :colnames params))) (org-babel-pick-name (cdr (assoc :rowname-names params)) (cdr (assoc :rownames params))))))) (defun org-babel-prep-session:python (session params) "Prepare SESSION according to the header arguments in PARAMS. VARS contains resolved variable references" (let* ((session (org-babel-python-initiate-session session)) (var-lines (org-babel-variable-assignments:python params))) (org-babel-comint-in-buffer session (mapc (lambda (var) (end-of-line 1) (insert var) (comint-send-input) (org-babel-comint-wait-for-output session)) var-lines)) session)) (defun org-babel-load-session:python (session body params) "Load BODY into SESSION." (save-window-excursion (let ((buffer (org-babel-prep-session:python session params))) (with-current-buffer buffer (goto-char (process-mark (get-buffer-process (current-buffer)))) (insert (org-babel-chomp body))) buffer))) ;; helper functions (defun org-babel-variable-assignments:python (params) "Return list of python statements assigning the block's variables" (mapcar (lambda (pair) (format "%s=%s" (car pair) (org-babel-python-var-to-python (cdr pair)))) (mapcar #'cdr (org-babel-get-header params :var)))) (defun org-babel-python-var-to-python (var) "Convert an elisp value to a python variable. Convert an elisp value, VAR, into a string of python source code specifying a variable of the same value." (if (listp var) (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]") (if (equal var 'hline) "None" (format (if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S") var)))) (defun org-babel-python-table-or-string (results) "Convert RESULTS into an appropriate elisp value. If the results look like a list or tuple, then convert them into an Emacs-lisp table, otherwise return the results as a string." (org-babel-script-escape results)) (defvar org-babel-python-buffers '((:default . nil))) (defun org-babel-python-session-buffer (session) "Return the buffer associated with SESSION." (cdr (assoc session org-babel-python-buffers))) (defun org-babel-python-initiate-session-by-key (&optional session) "Initiate a python session. If there is not a current inferior-process-buffer in SESSION then create. Return the initialized session." (require org-babel-python-mode) (save-window-excursion (let* ((session (if session (intern session) :default)) (python-buffer (org-babel-python-session-buffer session))) (cond ((and (eq 'python org-babel-python-mode) (fboundp 'run-python)) ; python.el (run-python)) ((and (eq 'python-mode org-babel-python-mode) (fboundp 'py-shell)) ; python-mode.el ;; `py-shell' creates a buffer whose name is the value of ;; `py-which-bufname' with '*'s at the beginning and end (let* ((bufname (if python-buffer (replace-regexp-in-string ;; zap surrounding * "^\\*\\([^*]+\\)\\*$" "\\1" python-buffer) (concat "Python-" (symbol-name session)))) (py-which-bufname bufname)) (py-shell) (setq python-buffer (concat "*" bufname "*")))) (t (error "No function available for running an inferior python."))) (setq org-babel-python-buffers (cons (cons session python-buffer) (assq-delete-all session org-babel-python-buffers))) session))) (defun org-babel-python-initiate-session (&optional session params) "Create a session named SESSION according to PARAMS." (unless (string= session "none") (org-babel-python-session-buffer (org-babel-python-initiate-session-by-key session)))) (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'" "A string to indicate that evaluation has completed.") (defvar org-babel-python-wrapper-method " def main(): %s open('%s', 'w').write( str(main()) )") (defvar org-babel-python-pp-wrapper-method " import pprint def main(): %s open('%s', 'w').write( pprint.pformat(main()) )") (defun org-babel-python-evaluate (session body &optional result-type result-params prefix) "Evaluate BODY as python code." (if session (org-babel-python-evaluate-session session body result-type result-params) (org-babel-python-evaluate-external-process body result-type result-params prefix))) (defun org-babel-python-evaluate-external-process (body &optional result-type result-params prefix) "Evaluate BODY in external python process. If RESULT-TYPE equals 'output then return standard output as a string. If RESULT-TYPE equals 'value then return the value of the last statement in BODY, as elisp." (case result-type (output (org-babel-eval org-babel-python-command (concat (if prefix (concat prefix "\n") "") body))) (value (let ((tmp-file (org-babel-temp-file "python-"))) (org-babel-eval org-babel-python-command (concat (if prefix (concat prefix "\n") "") (format (if (member "pp" result-params) org-babel-python-pp-wrapper-method org-babel-python-wrapper-method) (mapconcat (lambda (line) (format "\t%s" line)) (split-string (org-remove-indentation (org-babel-trim body)) "[\r\n]") "\n") (org-babel-process-file-name tmp-file 'noquote)))) ((lambda (raw) (if (or (member "code" result-params) (member "pp" result-params)) raw (org-babel-python-table-or-string raw))) (org-babel-eval-read-file tmp-file)))))) (defun org-babel-python-evaluate-session (session body &optional result-type result-params) "Pass BODY to the Python process in SESSION. If RESULT-TYPE equals 'output then return standard output as a string. If RESULT-TYPE equals 'value then return the value of the last statement in BODY, as elisp." (flet ((dump-last-value (tmp-file pp) (mapc (lambda (statement) (insert statement) (comint-send-input)) (if pp (list "import pprint" (format "open('%s', 'w').write(pprint.pformat(_))" (org-babel-process-file-name tmp-file 'noquote))) (list (format "open('%s', 'w').write(str(_))" (org-babel-process-file-name tmp-file 'noquote)))))) (input-body (body) (mapc (lambda (statement) (insert statement) (comint-send-input)) (split-string (org-babel-trim body) "[\r\n]+")) (comint-send-input) (comint-send-input))) (case result-type (output (mapconcat #'org-babel-trim (butlast (org-babel-comint-with-output (session org-babel-python-eoe-indicator t body) (let ((comint-process-echoes nil)) (input-body body) (insert org-babel-python-eoe-indicator) (comint-send-input))) 2) "\n")) (value ((lambda (results) (if (or (member "code" result-params) (member "pp" result-params)) results (org-babel-python-table-or-string results))) (let ((tmp-file (org-babel-temp-file "python-"))) (org-babel-comint-with-output (session org-babel-python-eoe-indicator t body) (let ((comint-process-echoes nil)) (input-body body) (dump-last-value tmp-file (member "pp" result-params)) (comint-send-input) (comint-send-input) (insert org-babel-python-eoe-indicator) (comint-send-input))) (org-babel-eval-read-file tmp-file))))))) (defun org-babel-python-read-string (string) "Strip 's from around python string" (if (string-match "^'\\([^\000]+\\)'$" string) (match-string 1 string) string)) (provide 'ob-python) ;; arch-tag: f19b6c3d-dfcb-4a1a-9ce0-45ade1ebc212 ;;; ob-python.el ends here