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24a5f8b4e5
* ob-python.el (org-babel-expand-body:python): Refactor: break variable
assignment part out into a separate function
(org-babel-python-variable-assignments): New function constructing
list of variable assignment statements
(org-babel-prep-session:python): Use new function
`org-babel-python-variable-assignments' instead of previous
(incorrect) variable assignment code.
296 lines
11 KiB
EmacsLisp
296 lines
11 KiB
EmacsLisp
;;; ob-python.el --- org-babel functions for python evaluation
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;; Copyright (C) 2009, 2010 Free Software Foundation
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;; Author: Eric Schulte, Dan Davison
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;; Keywords: literate programming, reproducible research
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;; Homepage: http://orgmode.org
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;; Version: 7.01trans
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;; This file is part of GNU Emacs.
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;; GNU Emacs is free software: you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation, either version 3 of the License, or
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;; (at your option) any later version.
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;; GNU Emacs is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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;; You should have received a copy of the GNU General Public License
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;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
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;;; Commentary:
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;; Org-Babel support for evaluating python source code.
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;;; Code:
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(require 'ob)
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(require 'ob-ref)
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(require 'ob-comint)
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(require 'ob-eval)
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(eval-when-compile (require 'cl))
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(declare-function org-remove-indentation "org" )
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(declare-function py-shell "ext:python-mode" (&optional argprompt))
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(declare-function run-python "ext:python" (&optional cmd noshow new))
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(add-to-list 'org-babel-tangle-lang-exts '("python" . "py"))
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(defvar org-babel-default-header-args:python '())
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(defvar org-babel-python-command "python"
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"Name of command for executing python code.")
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(defvar org-babel-python-mode (if (featurep 'xemacs) 'python-mode 'python)
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"Preferred python mode for use in running python interactively.")
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(defvar org-src-preserve-indentation)
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(defun org-babel-expand-body:python (body params &optional processed-params)
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"Expand BODY according to PARAMS, return the expanded body."
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(let ((var-lines
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(org-babel-python-variable-assignments params processed-params)))
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(mapconcat
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#'identity
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(append
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(org-babel-python-variable-assignments params processed-params)
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(list
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(org-babel-trim body (if org-src-preserve-indentation "[\f\n\r\v]"))))
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"\n")))
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(defun org-babel-execute:python (body params)
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"Execute a block of Python code with Babel.
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This function is called by `org-babel-execute-src-block'."
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(let* ((processed-params (org-babel-process-params params))
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(session (org-babel-python-initiate-session (first processed-params)))
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(result-params (nth 2 processed-params))
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(result-type (nth 3 processed-params))
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(full-body (org-babel-expand-body:python
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body params processed-params))
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(result (org-babel-python-evaluate
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session full-body result-type result-params)))
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(or (cdr (assoc :file params))
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(org-babel-reassemble-table
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result
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(org-babel-pick-name (nth 4 processed-params)
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(cdr (assoc :colnames params)))
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(org-babel-pick-name (nth 5 processed-params)
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(cdr (assoc :rownames params)))))))
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(defun org-babel-prep-session:python (session params)
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"Prepare SESSION according to the header arguments in PARAMS."
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(let* ((session (org-babel-python-initiate-session session))
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(var-lines (org-babel-python-variable-assignments params)))
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(org-babel-comint-in-buffer session
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(mapc (lambda (var)
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(end-of-line 1) (insert var) (comint-send-input)
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(org-babel-comint-wait-for-output session)) var-lines))
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session))
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(defun org-babel-load-session:python (session body params)
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"Load BODY into SESSION."
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(save-window-excursion
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(let ((buffer (org-babel-prep-session:python session params)))
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(with-current-buffer buffer
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(goto-char (process-mark (get-buffer-process (current-buffer))))
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(insert (org-babel-chomp body)))
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buffer)))
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;; helper functions
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(defun org-babel-python-variable-assignments (params &optional processed-params)
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(mapcar
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(lambda (pair)
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(format "%s=%s"
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(car pair)
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(org-babel-python-var-to-python (cdr pair))))
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(nth 1 (or processed-params (org-babel-process-params params)))))
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(defun org-babel-python-var-to-python (var)
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"Convert an elisp value to a python variable.
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Convert an elisp value, VAR, into a string of python source code
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specifying a variable of the same value."
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(if (listp var)
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(concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]")
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(if (equal var 'hline)
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"None"
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(format
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(if (and (stringp var) (string-match "[\n\r]" var)) "\"\"%S\"\"" "%S")
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var))))
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(defun org-babel-python-table-or-string (results)
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"Convert RESULTS into an appropriate elisp value.
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If the results look like a list or tuple, then convert them into an
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Emacs-lisp table, otherwise return the results as a string."
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((lambda (res)
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(if (listp res)
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(mapcar (lambda (el) (if (equal el 'None) 'hline el)) res)
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res))
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(org-babel-read
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(if (and (stringp results) (string-match "^[([].+[])]$" results))
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(org-babel-read
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(concat "'"
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(replace-regexp-in-string
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"\\[" "(" (replace-regexp-in-string
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"\\]" ")" (replace-regexp-in-string
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", " " " (replace-regexp-in-string
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"'" "\"" results t))))))
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results))))
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(defvar org-babel-python-buffers '((:default . nil)))
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(defun org-babel-python-session-buffer (session)
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"Return the buffer associated with SESSION."
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(cdr (assoc session org-babel-python-buffers)))
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(defun org-babel-python-initiate-session-by-key (&optional session)
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"Initiate a python session.
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If there is not a current inferior-process-buffer in SESSION
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then create. Return the initialized session."
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(require org-babel-python-mode)
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(save-window-excursion
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(let* ((session (if session (intern session) :default))
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(python-buffer (org-babel-python-session-buffer session)))
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(cond
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((and (eq 'python org-babel-python-mode)
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(fboundp 'run-python)) ; python.el
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(run-python))
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((and (eq 'python-mode org-babel-python-mode)
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(fboundp 'py-shell)) ; python-mode.el
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;; `py-shell' creates a buffer whose name is the value of
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;; `py-which-bufname' with '*'s at the beginning and end
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(let* ((bufname (if python-buffer
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(replace-regexp-in-string ;; zap surrounding *
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"^\\*\\([^*]+\\)\\*$" "\\1" python-buffer)
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(concat "Python-" (symbol-name session))))
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(py-which-bufname bufname))
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(py-shell)
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(setq python-buffer (concat "*" bufname "*"))))
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(t
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(error "No function available for running an inferior python.")))
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(setq org-babel-python-buffers
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(cons (cons session python-buffer)
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(assq-delete-all session org-babel-python-buffers)))
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session)))
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(defun org-babel-python-initiate-session (&optional session params)
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"Create a session named SESSION according to PARAMS."
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(unless (string= session "none")
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(org-babel-python-session-buffer
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(org-babel-python-initiate-session-by-key session))))
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(defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'"
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"A string to indicate that evaluation has completed.")
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(defvar org-babel-python-wrapper-method
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"
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def main():
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%s
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open('%s', 'w').write( str(main()) )")
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(defvar org-babel-python-pp-wrapper-method
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"
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import pprint
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def main():
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%s
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open('%s', 'w').write( pprint.pformat(main()) )")
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(defun org-babel-python-evaluate
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(session body &optional result-type result-params)
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"Evaluate BODY as python code."
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(if session
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(org-babel-python-evaluate-session
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session body result-type result-params)
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(org-babel-python-evaluate-external-process
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body result-type result-params)))
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(defun org-babel-python-evaluate-external-process
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(body &optional result-type result-params)
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"Evaluate BODY in external python process.
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If RESULT-TYPE equals 'output then return standard output as a
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string. If RESULT-TYPE equals 'value then return the value of the
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last statement in BODY, as elisp."
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(case result-type
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(output (org-babel-eval org-babel-python-command body))
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(value (let ((tmp-file (org-babel-temp-file "python-")))
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(org-babel-eval org-babel-python-command
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(format
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(if (member "pp" result-params)
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org-babel-python-pp-wrapper-method
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org-babel-python-wrapper-method)
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(mapconcat
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(lambda (line) (format "\t%s" line))
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(split-string
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(org-remove-indentation
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(org-babel-trim body))
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"[\r\n]") "\n")
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(org-babel-process-file-name tmp-file 'noquote)))
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((lambda (raw)
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(if (or (member "code" result-params)
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(member "pp" result-params))
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raw
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(org-babel-python-table-or-string raw)))
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(org-babel-eval-read-file tmp-file))))))
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(defun org-babel-python-evaluate-session
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(session body &optional result-type result-params)
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"Pass BODY to the Python process in SESSION.
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If RESULT-TYPE equals 'output then return standard output as a
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string. If RESULT-TYPE equals 'value then return the value of the
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last statement in BODY, as elisp."
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(flet ((dump-last-value
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(tmp-file pp)
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(mapc
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(lambda (statement) (insert statement) (comint-send-input))
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(if pp
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(list
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"import pp"
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(format "open('%s', 'w').write(pprint.pformat(_))"
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(org-babel-process-file-name tmp-file 'noquote)))
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(list (format "open('%s', 'w').write(str(_))"
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(org-babel-process-file-name tmp-file 'noquote))))))
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(input-body (body)
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(mapc (lambda (statement) (insert statement) (comint-send-input))
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(split-string (org-babel-trim body) "[\r\n]+"))
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(comint-send-input) (comint-send-input)))
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(case result-type
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(output
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(mapconcat
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#'org-babel-trim
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(butlast
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(org-babel-comint-with-output
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(session org-babel-python-eoe-indicator t body)
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(let ((comint-process-echoes nil))
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(input-body body)
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(insert org-babel-python-eoe-indicator)
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(comint-send-input))) 2) "\n"))
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(value
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((lambda (results)
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(if (or (member "code" result-params) (member "pp" result-params))
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results
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(org-babel-python-table-or-string results)))
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(let ((tmp-file (org-babel-temp-file "python-")))
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(org-babel-comint-with-output
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(session org-babel-python-eoe-indicator t body)
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(let ((comint-process-echoes nil))
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(input-body body)
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(dump-last-value tmp-file (member "pp" result-params))
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(comint-send-input) (comint-send-input)
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(insert org-babel-python-eoe-indicator)
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(comint-send-input)))
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(org-babel-eval-read-file tmp-file)))))))
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(defun org-babel-python-read-string (string)
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"Strip 's from around python string"
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(if (string-match "^'\\([^\000]+\\)'$" string)
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(match-string 1 string)
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string))
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(provide 'ob-python)
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;; arch-tag: f19b6c3d-dfcb-4a1a-9ce0-45ade1ebc212
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;;; ob-python.el ends here
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