82 lines
2.0 KiB
Nix
82 lines
2.0 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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replaceVars,
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cmake,
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openjpeg,
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yaml-cpp,
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batchVersion ? false,
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withJpegLs ? true,
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withOpenJpeg ? true,
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withCloudflareZlib ? true,
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}:
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let
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cloudflareZlib = fetchFromGitHub {
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owner = "ningfei";
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repo = "zlib";
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# HEAD revision of the gcc.amd64 branch on 2023-03-28. Reminder to update
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# whenever bumping package version.
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rev = "f49b13c3380cf9677ae9a93641ebc6f770899def";
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sha256 = "sha256-8HNFUGx2uuEb8UrGUiqkN+uVDX83YIisT2uO1Z7GCxc=";
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};
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in
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stdenv.mkDerivation (finalAttrs: {
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version = "1.0.20240202";
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pname = "dcm2niix";
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src = fetchFromGitHub {
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owner = "rordenlab";
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repo = "dcm2niix";
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rev = "v${finalAttrs.version}";
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sha256 = "sha256-vJUPv/6KNCsU8UjwfktHdTlsweG7+UGgAEZeESfBkD8=";
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};
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patches = lib.optionals withCloudflareZlib [
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(replaceVars ./dont-fetch-external-libs.patch {
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inherit cloudflareZlib;
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})
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];
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nativeBuildInputs = [ cmake ];
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buildInputs =
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lib.optionals batchVersion [ yaml-cpp ]
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++ lib.optionals withOpenJpeg [
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openjpeg
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openjpeg.dev
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];
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cmakeFlags =
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lib.optionals batchVersion [
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"-DBATCH_VERSION=ON"
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"-DYAML-CPP_DIR=${yaml-cpp}/lib/cmake/yaml-cpp"
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]
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++ lib.optionals withJpegLs [
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"-DUSE_JPEGLS=ON"
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]
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++ lib.optionals withOpenJpeg [
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"-DUSE_OPENJPEG=ON"
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"-DOpenJPEG_DIR=${openjpeg}/lib/${openjpeg.pname}-${lib.versions.majorMinor openjpeg.version}"
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]
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++ lib.optionals withCloudflareZlib [
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"-DZLIB_IMPLEMENTATION=Cloudflare"
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];
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meta = {
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description = "DICOM to NIfTI converter";
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mainProgram = "dcm2niix";
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longDescription = ''
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dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format.
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'';
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homepage = "https://www.nitrc.org/projects/dcm2nii";
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changelog = "https://github.com/rordenlab/dcm2niix/releases/tag/v${finalAttrs.version}";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [
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ashgillman
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rbreslow
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];
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platforms = lib.platforms.all;
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};
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})
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