2021-05-26 21:39:02 +00:00
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PORTNAME= unikmer
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DISTVERSIONPREFIX= v
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2024-06-11 17:11:06 +00:00
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DISTVERSION= 0.20.0
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2024-07-03 08:23:32 +00:00
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PORTREVISION= 2
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2021-05-26 21:39:02 +00:00
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CATEGORIES= biology
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Toolkit for nucleic acid k-mer analysis, set operations on k-mers
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2024-06-11 17:11:06 +00:00
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WWW= https://github.com/shenwei356/unikmer/
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2021-05-26 21:39:02 +00:00
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LICENSE= MIT
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LICENSE_FILE= ${WRKSRC}/LICENSE
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2021-08-14 18:34:40 +00:00
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TEST_DEPENDS= csvtk:science/csvtk
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2021-09-03 13:01:58 +00:00
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USES= go:modules perl5
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2023-03-20 13:29:48 +00:00
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USE_GITHUB= nodefault
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2024-06-11 17:11:06 +00:00
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GH_TUPLE= golang:sys:v0.21.0:sys
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2021-09-03 13:01:58 +00:00
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USE_PERL5= test
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2021-05-26 21:39:02 +00:00
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GO_MODULE= github.com/shenwei356/unikmer
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GO_TARGET= ./${PORTNAME}
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PLIST_FILES= bin/${PORTNAME}
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2023-03-20 13:29:48 +00:00
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pre-patch:
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${RM} -r ${WRKSRC}/vendor/golang.org/x/sys
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${LN} -s ${WRKDIR}/sys-* ${WRKSRC}/vendor/golang.org/x/sys
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2021-08-14 18:34:40 +00:00
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do-test: # from the benchmark section in README
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@cd ${WRKSRC} && \
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${GO_CMD} test . -bench=Bench* -benchmem \
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| ${GREP} Bench \
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2021-09-26 08:40:04 +00:00
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| ${PERL} -pe 's/\s\s+/\t/g' \
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2021-08-14 18:34:40 +00:00
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| csvtk cut -Ht -f 1,3-5 \
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| csvtk add-header -t -n test,time,memory,allocs \
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| csvtk pretty -t -r
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2021-05-26 21:39:02 +00:00
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.include <bsd.port.mk>
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