2016-03-23 11:22:39 +00:00
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# $FreeBSD$
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2016-12-20 17:01:27 +00:00
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PORTNAME= bowtie2
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2017-11-30 02:59:16 +00:00
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PORTVERSION= 2.3.3.1
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2016-03-23 11:22:39 +00:00
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DISTVERSIONPREFIX= v
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2016-12-20 17:01:27 +00:00
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CATEGORIES= biology
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2016-03-23 11:22:39 +00:00
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2017-11-30 02:59:16 +00:00
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MAINTAINER= jwb@FreeBSD.org
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2016-03-23 11:22:39 +00:00
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COMMENT= Ultrafast, memory-efficient short read aligner
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2016-12-20 17:01:27 +00:00
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LICENSE= GPLv3+
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LICENSE_FILE= ${WRKSRC}/LICENSE
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2016-03-23 11:22:39 +00:00
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# May also work on other 64-bit platforms, but untested
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ONLY_FOR_ARCHS= amd64
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2017-11-30 02:59:16 +00:00
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LIB_DEPENDS= libtbb.so:devel/tbb
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2016-12-20 17:01:27 +00:00
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USES= gmake perl5 python shebangfix
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2016-03-23 11:22:39 +00:00
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USE_PERL5= run
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2017-11-30 02:59:16 +00:00
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SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl
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2016-03-23 11:22:39 +00:00
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USE_GITHUB= yes
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GH_ACCOUNT= BenLangmead
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2016-12-20 17:01:27 +00:00
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OPTIONS_DEFINE= DOCS EXAMPLES
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2016-03-23 11:22:39 +00:00
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post-install:
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${MKDIR} ${STAGEDIR}${DATADIR}/scripts
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${INSTALL_PROGRAM} \
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${WRKSRC}/bowtie2*-s \
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${WRKSRC}/bowtie2*-l \
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${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} \
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${WRKSRC}/scripts/*.sh \
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${WRKSRC}/scripts/*.pl \
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${STAGEDIR}${DATADIR}/scripts
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2016-12-20 17:01:27 +00:00
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post-install-DOCS-on:
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(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
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post-install-EXAMPLES-on:
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(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
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2016-03-23 11:22:39 +00:00
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.include <bsd.port.mk>
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