Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 20:39:51 +00:00
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# New ports collection makefile for: Bio-NEXUS
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# Date created: 20 Sug, 2009
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# Whom: Wen Heping <wenheping@gmail.com>
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#
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# $FreeBSD$
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#
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PORTNAME= Bio-NEXUS
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2010-09-25 08:14:02 +00:00
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PORTVERSION= 0.76
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Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 20:39:51 +00:00
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CATEGORIES= biology perl5
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MASTER_SITES= CPAN
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PKGNAMEPREFIX= p5-
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2010-12-25 16:55:41 +00:00
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MAINTAINER= perl@FreeBSD.org
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Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 20:39:51 +00:00
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COMMENT= An object-oriented Perl API for the NEXUS file format
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BUILD_DEPENDS= p5-Clone-PP>=1.02:${PORTSDIR}/devel/p5-Clone-PP \
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p5-Test-Deep>=0.106:${PORTSDIR}/devel/p5-Test-Deep
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RUN_DEPENDS= ${BUILD_DEPENDS}
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PERL_CONFIGURE= yes
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MAN1= nextool.pl.1 nex2text_tree.pl.1 nexplot.pl.1
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MAN3= Bio::NEXUS::DataBlock.3 Bio::NEXUS::CodonsBlock.3 \
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Bio::NEXUS::NotesBlock.3 Bio::NEXUS::NHXCmd.3 \
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Bio::NEXUS::HistoryBlock.3 Bio::NEXUS::TaxUnit.3 \
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Bio::NEXUS::CharactersBlock.3 Bio::NEXUS::SpanBlock.3 \
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Bio::NEXUS::UnalignedBlock.3 Bio::NEXUS::TaxUnitSet.3 \
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Bio::NEXUS::DistancesBlock.3 Bio::NEXUS::UnknownBlock.3 \
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Bio::NEXUS::Node.3 Bio::NEXUS::Matrix.3 \
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Bio::NEXUS::Tree.3 Bio::NEXUS::WeightSet.3 \
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Bio::NEXUS::TreesBlock.3 Bio::NEXUS::Util::Exceptions.3 \
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Bio::NEXUS::SetsBlock.3 Bio::NEXUS::TaxaBlock.3 \
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Bio::NEXUS::Util::Logger.3 Bio::NEXUS::AssumptionsBlock.3 \
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Bio::NEXUS::Block.3 Bio::NEXUS::Functions.3 \
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2010-09-07 07:15:24 +00:00
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Bio::NEXUS::Tools::GraphicsParams.3 \
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Bio::NEXUS::Tools::NexModifier.3 \
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Bio::NEXUS::Tools::NexPlotter.3 \
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Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
WWW: http://search.cpan.org/dist/Bio-NEXUS/
PR: ports/137983
Submitted by: Wen Heping <wenheping at gmail.com>
2009-08-22 20:39:51 +00:00
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Bio::NEXUS.3
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.include <bsd.port.mk>
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