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freebsd-ports/science/massxpert/Makefile

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- Changed my email - Trim Makefile headers and positions name and surname within Approved by: eadler, rm (mentors)
2013-07-22 14:34:22 +00:00
# Created by: Veniamin Gvozdikov <vg@FreeBSD.org>
The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
2010-05-20 09:43:14 +00:00
# $FreeBSD$
PORTNAME= massxpert
- Update to 3.4.0 PR: 175601 Submitted by: maintainer
2013-02-09 14:02:02 +00:00
PORTVERSION= 3.4.0
Drop USES=iconv. The port's source does not use iconv anywhere, so remove the unnecessary dependency from the Makefile. PR: 202717 Approved by: maintainer timeout (vg, 14 days)
2015-09-11 09:43:07 +00:00
PORTREVISION= 4
The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
2010-05-20 09:43:14 +00:00
CATEGORIES= science
MASTER_SITES= http://download.tuxfamily.org/massxpert/source/
- Changed my email - Trim Makefile headers and positions name and surname within Approved by: eadler, rm (mentors)
2013-07-22 14:34:22 +00:00
MAINTAINER= vg@FreeBSD.org
science/massxpert: Fix two logical errors (found by gcc5) There were two boolean logic issues found by gcc5 when compiling massxpert. One was comparing boolean output to a negative integer (is always false) and the other applied the "not" operator in the wrong place. Fix provided per request by maintainer. PR: 197823
2015-03-22 00:06:34 +00:00
COMMENT= massXpert software for (bio)chemists
The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
2010-05-20 09:43:14 +00:00
- Update to 2.4.3 - LICENSE added PR: ports/156059 Submitted by: Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
2011-03-31 06:51:37 +00:00
LICENSE= GPLv3
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. With hat: portmgr Sponsored by: Absolight
2016-04-01 14:25:16 +00:00
LIB_DEPENDS= libpthread-stubs.so:devel/libpthread-stubs \
libpcre.so:devel/pcre \
libpng.so:graphics/png \
libfreetype.so:print/freetype2 \
libexpat.so:textproc/expat2 \
libfontconfig.so:x11-fonts/fontconfig
- Support staging.
2014-06-30 20:38:59 +00:00
- Update to 3.4.0 PR: 175601 Submitted by: maintainer
2013-02-09 14:02:02 +00:00
USE_GCC= any
Drop USES=iconv. The port's source does not use iconv anywhere, so remove the unnecessary dependency from the Makefile. PR: 202717 Approved by: maintainer timeout (vg, 14 days)
2015-09-11 09:43:07 +00:00
USES= cmake gettext tar:bzip2
The FreeBSD x11 team proudly presents an zeising, kwm, miwi, bapt, eadler production: Xorg 7.7 Starring: xserver 1.12.4 (new xorg only) Mesa 8.0.4, including libGL, libGLU and dri (new xorg only) libX11 1.5.0 libxcb 1.9 libdrm 2.4.42 (new xorg only) freeglut 2.8.1 Also starring: Updates to drivers and other libraries and utilities Additional notes: Change pkgconf to be a build dependency. Add a new USE_XORG, xcb, to depend on libxcb and update all ports to use this. Trim makefile headers. Take maintanership of x11/xcb-proto, ok'd by ashish. If you are running WITH_NEW_XORG=, you need to rebuild all installed drivers, see UPDATING for more information. Various fixes to make ports compile. PR: ports/177942 Exp-run by: miwi Approved by: portmgr (miwi) Thanks to all who helped testing!
2013-05-25 14:37:02 +00:00
USE_XORG= ice sm x11 xau xcb xdmcp xext xrender
- Update to version 3.3.0 [1] - Add missing deps - Mark MAKE_JOBS_UNSAFE - tab -> space in WWW: line PR: ports/174397 [1] Submitted by: Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
2012-12-16 20:59:39 +00:00
USE_GNOME= glib20
USE_QT4= corelib gui xml rcc_build qmake_build uic_build moc_build \
The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
2010-05-20 09:43:14 +00:00
svg
- Update to version 3.3.0 [1] - Add missing deps - Mark MAKE_JOBS_UNSAFE - tab -> space in WWW: line PR: ports/174397 [1] Submitted by: Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
2012-12-16 20:59:39 +00:00
USE_LDCONFIG= yes
MAKE_JOBS_UNSAFE= yes
The massXpert project aims at providing (bio)chemists with a software package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
2010-05-20 09:43:14 +00:00
Remove CMAKE_USE_PTHREAD from the ports using it. This setting has not had any effect since r1.13 to bsd.cmake.mk, as it was only useful when we supported FreeBSD < 7. Approved by: avilla (mentor), portmgr (miwi) Feature safe: yes
2011-11-14 03:26:46 +00:00
.include <bsd.port.mk>
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