2017-05-06 06:05:24 +00:00
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pysam is a lightweight wrapper of the htslib C-API and provides facilities to
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read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
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to the command line functionality of the samtools and bcftools packages. The
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module supports compression and random access through indexing.
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This module provides a low-level wrapper around the htslib C-API as using
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cython and a high-level API for convenient access to the data within standard
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genomic file formats.
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2018-04-25 16:42:37 +00:00
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WWW: https://pypi.org/project/pysam/
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