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science/gromacs: Fix tests

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... by replacing the old bundled googletest with a newest release.
This commit is contained in:
Yuri Victorovich 2023-07-13 17:19:40 -07:00
parent bc59c09bd5
commit 038e81ab53
2 changed files with 13 additions and 4 deletions
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13
science/gromacs/Makefile
View File

@ -2,6 +2,7 @@ PORTNAME= gromacs
DISTVERSION= 2023.2 DISTVERSION= 2023.2
CATEGORIES= science CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX} # only for googletest
MAINTAINER= yuri@FreeBSD.org MAINTAINER= yuri@FreeBSD.org
COMMENT= Compute molecular dynamics COMMENT= Compute molecular dynamics
@ -14,12 +15,14 @@ BROKEN_i386= undefined reference to `__atomic_load' and `__atomic_compare_exchan
BUILD_DEPENDS= boost-libs>=1.44:devel/boost-libs BUILD_DEPENDS= boost-libs>=1.44:devel/boost-libs
LIB_DEPENDS= libhwloc.so:devel/hwloc2 LIB_DEPENDS= libhwloc.so:devel/hwloc2
TEST_DEPENDS= googletest>0:devel/googletest
USES= cmake compiler:c++17-lang fortran gnome perl5 pkgconfig python:build shebangfix xorg USES= cmake compiler:c++17-lang gnome perl5 pkgconfig python:build shebangfix xorg
USE_GNOME= libxml2 USE_GNOME= libxml2
USE_LDCONFIG= yes USE_LDCONFIG= yes
USE_GITHUB= nodefault
GH_TUPLE= google:googletest:v1.13.0:googletest
SHEBANG_FILES= admin/*.sh scripts/*.pl scripts/*.sh src/gromacs/selection/*.sh SHEBANG_FILES= admin/*.sh scripts/*.pl scripts/*.sh src/gromacs/selection/*.sh
bash_CMD= ${SH} bash_CMD= ${SH}
@ -32,7 +35,7 @@ TEST_TARGET= check
OPTIONS_DEFINE= ATLAS FLOAT LEGACY OPENCL OPENMP SIMD X11 OPTIONS_DEFINE= ATLAS FLOAT LEGACY OPENCL OPENMP SIMD X11
OPTIONS_SINGLE= MP OPTIONS_SINGLE= MP
OPTIONS_SINGLE_MP= NOMP MPICH OPENMPI THREAD_MPI OPTIONS_SINGLE_MP= NOMP MPICH OPENMPI THREAD_MPI
OPTIONS_DEFAULT= LEGACY OPENMP THREAD_MPI X11 # FLOAT should not a default because science/votca needs double precision. This is likely the same for many other uses. OPTIONS_DEFAULT= LEGACY OPENMP THREAD_MPI X11 # FLOAT should not be a default because science/votca needs double precision. This is likely the same for many other uses.
OPTIONS_SUB= yes OPTIONS_SUB= yes
ATLAS_DESC= Use ATLAS for BLAS and LAPACK ATLAS_DESC= Use ATLAS for BLAS and LAPACK
@ -88,6 +91,10 @@ THREAD_MPI_DESC= Build a thread-MPI-based multithreaded version of GROMACS
THREAD_MPI_CMAKE_BOOL= GMX_THREAD_MPI THREAD_MPI_CMAKE_BOOL= GMX_THREAD_MPI
THREAD_MPI_PLIST_SUB= SUFFIX_MPI="" THREAD_MPI_PLIST_SUB= SUFFIX_MPI=""
post-extract: # replace outdated bundled googletest with a newer version to fix tests build, see https://gitlab.com/gromacs/gromacs/-/issues/4825
@${RM} -r ${WRKSRC}/src/external/googletest
@${RLN} ${WRKSRC_googletest} ${WRKSRC}/src/external/googletest
post-patch: post-patch:
@${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \ @${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \
's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \ 's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \

4
science/gromacs/distinfo
View File

@ -1,3 +1,5 @@
TIMESTAMP = 1689223634 TIMESTAMP = 1689290012
SHA256 (gromacs-2023.2.tar.gz) = bce1480727e4b2bb900413b75d99a3266f3507877da4f5b2d491df798f9fcdae SHA256 (gromacs-2023.2.tar.gz) = bce1480727e4b2bb900413b75d99a3266f3507877da4f5b2d491df798f9fcdae
SIZE (gromacs-2023.2.tar.gz) = 41930578 SIZE (gromacs-2023.2.tar.gz) = 41930578
SHA256 (google-googletest-v1.13.0_GH0.tar.gz) = ad7fdba11ea011c1d925b3289cf4af2c66a352e18d4c7264392fead75e919363
SIZE (google-googletest-v1.13.0_GH0.tar.gz) = 862871