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Code Issues Releases Activity

- Update to version 6

Browse Source 
- Pass maintainership to submitter

PR:		ports/76219
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	maintainer timeout (2 monthes)
This commit is contained in:
Sergey Matveychuk 2005-03-12 08:01:19 +00:00
parent 3ef4b795f4
commit 0dc38c05ba
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=130959
4 changed files with 1529 additions and 1505 deletions
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21
biology/artemis/Makefile
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@ -6,30 +6,27 @@
#
PORTNAME= artemis
PORTVERSION= 4.0
PORTREVISION= 1
PORTVERSION= 6
CATEGORIES= biology
MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v4/
DISTNAME= artemis_compiled_v4
MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v${PORTVERSION}/
DISTNAME= artemis_compiled_v${PORTVERSION}
MAINTAINER= chuynh@biolateral.com.au
MAINTAINER= fernan@iib.unsam.edu.ar
COMMENT= A DNA sequence viewer and annotation tool
RUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13
WRKSRC= ${WRKDIR}/${PORTNAME}
JDK_VERSION= 1.3.1
JDK_DIR= ${PREFIX}/jdk${JDK_VERSION}
JAVA_COMMAND= ${JDK_DIR}/bin/java
USE_JAVA= yes
JAVA_VERSION= 1.4+
JAVA_RUN= yes
NO_BUILD= yes
PLIST_SUB= PORTVERSION="${PORTVERSION}"
do-install:
@${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION}
@${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf-
@${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/art ${PREFIX}/bin/art
PLIST_SUB= PORTVERSION="${PORTVERSION}"
@${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/act ${PREFIX}/bin/act
.include <bsd.port.mk>

4
biology/artemis/distinfo
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@ -1,2 +1,2 @@
MD5 (artemis_compiled_v4.tar.gz) = e970b57e993a6b6d254ae70f83e1304e
SIZE (artemis_compiled_v4.tar.gz) = 4773345
MD5 (artemis_compiled_v6.tar.gz) = 5ebd3db7edbb74eab5a84df9c693d4e1
SIZE (artemis_compiled_v6.tar.gz) = 3947732

18
biology/artemis/pkg-descr
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@ -1,7 +1,13 @@
Artemis is a DNA sequence viewer and annotation tool that allows visualisation
of sequence features and the results of analyses within the context of the
sequence, and its six-frame translation. Artemis is written in Java, reads
EMBL or GENBANK format sequences and feature tables, and can work on sequences
of any size.
Artemis is a DNA sequence viewer and annotation tool that allows
visualisation of sequence features and the results of analyses within
the context of the sequence, and its six-frame translation. Artemis is
written in Java, reads EMBL or GENBANK format sequences and feature
tables, and can work on sequences of any size.
WWW: http://www.sanger.ac.uk/Software/Artemis/manual
ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based
on Artemis. It can open two or more sequences (and their
annotations/features) together with their comparisons (usually the
result of running blastn or tblastx searches).
WWW: http://www.sanger.ac.uk/Software/Artemis/manual
WWW: http://www.sanger.ac.uk/Software/ACT/manual

2991
biology/artemis/pkg-plist
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