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biology/checkm: update 1.2.2 → 1.2.3

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PR:	282551
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Älven 2024-12-14 22:50:29 -08:00 committed by Yuri Victorovich
parent a0759227bb
commit 14109e26bb
3 changed files with 17 additions and 15 deletions
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2
biology/checkm/Makefile
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@ -1,6 +1,6 @@
PORTNAME= CheckM
DISTVERSIONPREFIX= v
DISTVERSION= 1.2.2
DISTVERSION= 1.2.3
CATEGORIES= biology python
MAINTAINER= yuri@FreeBSD.org

6
biology/checkm/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1713784123
SHA256 (Ecogenomics-CheckM-v1.2.2_GH0.tar.gz) = a748b94e93f8d5fecfd0d5b3f17fcb119b25d4b45217e047b2fd742b21e74c0e
SIZE (Ecogenomics-CheckM-v1.2.2_GH0.tar.gz) = 1017249
TIMESTAMP = 1730733018
SHA256 (Ecogenomics-CheckM-v1.2.3_GH0.tar.gz) = 5f8340e71d3256ba8cf407d27bdc7914d1aa86b14b2d63d1e32cceb325e5aa82
SIZE (Ecogenomics-CheckM-v1.2.3_GH0.tar.gz) = 1017616

24
biology/checkm/pkg-descr
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@ -1,11 +1,13 @@
CheckM provides a set of tools for assessing the quality of genomes
recovered from isolates, single cells, or metagenomes.
It provides robust estimates of genome completeness and contamination
by using collocated sets of genes that are ubiquitous and single-copy
within a phylogenetic lineage.
Assessment of genome quality can also be examined using plots depicting
key genomic characteristics (e.g., GC, coding density) which highlight
sequences outside the expected distributions of a typical genome.
CheckM also provides tools for identifying genome bins that are likely
candidates for merging based on marker set compatibility, similarity in
genomic characteristics, and proximity within a reference genome tree.
CheckM provides a set of tools for assessing the quality of genomes recovered
from isolates, single cells, or metagenomes.
It provides robust estimates of genome completeness and contamination by using
collocated sets of genes that are ubiquitous and single-copy within a
phylogenetic lineage.
Assessment of genome quality can also be examined using plots depicting key
genomic characteristics (e.g., GC, coding density) which highlight sequences
outside the expected distributions of a typical genome. CheckM also provides
tools for identifying genome bins that are likely candidates for merging based
on marker set compatibility, similarity in genomic characteristics, and
proximity within a reference genome tree.