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biology/bowtie2: Update to version 2.2.9

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- Update license information.
- Add python to USES (bowtie2-build bowtie2-inspect need python)
- Add DOCS and EXAMPLES options

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8182
This commit is contained in:
Joseph Mingrone 2016-12-20 17:01:27 +00:00
parent 78fbf405d6
commit 14eec0f1a6
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=429003
2 changed files with 18 additions and 14 deletions
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27
biology/bowtie2/Makefile
View File

@ -1,25 +1,28 @@
# Created by: Jason Bacon # Created by: Jason Bacon
# $FreeBSD$ # $FreeBSD$
PORTNAME= bowtie2 PORTNAME= bowtie2
PORTVERSION= 2.2.8 PORTVERSION= 2.2.9
DISTVERSIONPREFIX= v DISTVERSIONPREFIX= v
CATEGORIES= biology CATEGORIES= biology
MAINTAINER= bacon4000@gmail.com MAINTAINER= bacon4000@gmail.com
COMMENT= Ultrafast, memory-efficient short read aligner COMMENT= Ultrafast, memory-efficient short read aligner
LICENSE= GPLv3 LICENSE= GPLv3+
LICENSE_FILE= ${WRKSRC}/LICENSE
# May also work on other 64-bit platforms, but untested # May also work on other 64-bit platforms, but untested
ONLY_FOR_ARCHS= amd64 ONLY_FOR_ARCHS= amd64
USES= gmake perl5 shebangfix USES= gmake perl5 python shebangfix
USE_PERL5= run USE_PERL5= run
SHEBANG_FILES= scripts/*.pl SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl
USE_GITHUB= yes USE_GITHUB= yes
GH_ACCOUNT= BenLangmead GH_ACCOUNT= BenLangmead
OPTIONS_DEFINE= DOCS EXAMPLES
post-install: post-install:
${MKDIR} ${STAGEDIR}${DATADIR}/scripts ${MKDIR} ${STAGEDIR}${DATADIR}/scripts
${INSTALL_PROGRAM} \ ${INSTALL_PROGRAM} \
@ -30,11 +33,11 @@ post-install:
${WRKSRC}/scripts/*.sh \ ${WRKSRC}/scripts/*.sh \
${WRKSRC}/scripts/*.pl \ ${WRKSRC}/scripts/*.pl \
${STAGEDIR}${DATADIR}/scripts ${STAGEDIR}${DATADIR}/scripts
cd ${WRKSRC}/example && ${COPYTREE_SHARE} \
'index reads reference' \ post-install-DOCS-on:
${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \
\* \ post-install-EXAMPLES-on:
${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
.include <bsd.port.mk> .include <bsd.port.mk>

5
biology/bowtie2/distinfo
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@ -1,2 +1,3 @@
SHA256 (BenLangmead-bowtie2-v2.2.8_GH0.tar.gz) = e4795f5779dfdefffcc9c341239c1fb6f7d78e15528c6094d9c580a5c0e87ac1 TIMESTAMP = 1475861880
SIZE (BenLangmead-bowtie2-v2.2.8_GH0.tar.gz) = 5814699 SHA256 (BenLangmead-bowtie2-v2.2.9_GH0.tar.gz) = af940f77fc36aabea90d3d865724fd7ec7e250788d2d2f793c45c713d16ae5ee
SIZE (BenLangmead-bowtie2-v2.2.9_GH0.tar.gz) = 5815106