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Code Issues Releases Activity

biology/htslib: Update 1.6 -> 1.8

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Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW

PR:		228908
Approved by:	maintainer's timeout (cartwright@asu.edu; 35 days)
This commit is contained in:
Yuri Victorovich 2018-07-16 18:11:44 +00:00
parent 0f9f51655f
commit 19d0c4c3a4
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=474752
4 changed files with 8 additions and 10 deletions
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9
biology/htslib/Makefile
View File

@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= htslib
PORTVERSION= 1.6
DISTVERSION= 1.8
CATEGORIES= biology devel
MAINTAINER= cartwright@asu.edu
@ -14,10 +14,9 @@ LICENSE_FILE= ${WRKSRC}/LICENSE
TEST_DEPENDS= bash:shells/bash
USES= autoreconf gmake localbase pathfix perl5 shebangfix
USE_GITHUB= yes
GH_ACCOUNT= samtools
USES= autoreconf gmake pathfix perl5 shebangfix
USE_PERL5= test
USE_LDCONFIG= yes
GNU_CONFIGURE= yes
@ -28,12 +27,10 @@ OPTIONS_DEFINE= CURL
OPTIONS_DEFAULT= CURL
CURL_DESC= Use libcurl for network file access (HTTPS and S3 support).
CURL_USES= ssl
CURL_LIB_DEPENDS= libcurl.so:ftp/curl
CURL_CONFIGURE_ENABLE= libcurl
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
PLIST_SUB= PORTVERSION="${PORTVERSION}"
TEST_TARGET= test

6
biology/htslib/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1508301522
SHA256 (samtools-htslib-1.6_GH0.tar.gz) = 4215c9153c27603cbaaf542f2ec128c5e839380d6df6edd4dbf67955170740c6
SIZE (samtools-htslib-1.6_GH0.tar.gz) = 1155672
TIMESTAMP = 1528766078
SHA256 (samtools-htslib-1.8_GH0.tar.gz) = ad52105c0f9ce6474c8f5d2f208b8e71982436ee1ca5225162932b08aff48b23
SIZE (samtools-htslib-1.8_GH0.tar.gz) = 1262465

2
biology/htslib/pkg-descr
View File

@ -2,4 +2,4 @@ HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
WWW: http://www.htslib.org/
WWW: https://www.htslib.org/

1
biology/htslib/pkg-plist
View File

@ -32,6 +32,7 @@ lib/libhts.so
lib/libhts.so.%%PORTVERSION%%
lib/libhts.so.2
libdata/pkgconfig/htslib.pc
man/man1/bgzip.1.gz
man/man1/htsfile.1.gz
man/man1/tabix.1.gz
man/man5/faidx.5.gz