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Code Issues Releases Activity

- Update to 5.12

Browse Source 
PR:		ports/66636
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
Approved by:	maintainer timeout (2 weeks)
This commit is contained in:
Pav Lucistnik 2004-06-05 00:31:45 +00:00
parent fb5bdf93b8
commit 1a5bf22673
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=110859
7 changed files with 11 additions and 10906 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

12
science/xmakemol/Makefile
View File

@ -5,10 +5,10 @@
#
PORTNAME= xmakemol
PORTVERSION= 4.40
PORTREVISION= 1
PORTVERSION= 5.12
CATEGORIES= science
MASTER_SITES= http://vegemite.chem.nottingham.ac.uk/~xmakemol/dists/
MASTER_SITES= ${MASTER_SITE_SAVANNAH}
MASTER_SITE_SUBDIR= ${PORTNAME}
MAINTAINER= chizhang@uchicago.edu
COMMENT= Molecule Viewer Program Based on Motif Widget
@ -18,10 +18,12 @@ USE_MOTIF= yes
USE_GMAKE= yes
GNU_CONFIGURE= yes
.include <bsd.port.pre.mk>
MAN1= xmakemol.1
pre-configure:
cd ${WRKSRC}; ${CHMOD} 755 config.guess config.sub configure install-sh missing mkinstalldirs
post-install:
${STRIP_CMD} ${PREFIX}/bin/xmakemol
.include <bsd.port.post.mk>
.include <bsd.port.mk>

4
science/xmakemol/distinfo
View File

@ -1,2 +1,2 @@
MD5 (xmakemol-4.40.tar.gz) = d12923759a431ede67afbdd09b369e0f
SIZE (xmakemol-4.40.tar.gz) = 119653
MD5 (xmakemol-5.12.tar.gz) = 0d532d6e25a2796a5019ac38e532c04d
SIZE (xmakemol-5.12.tar.gz) = 253339

683
science/xmakemol/files/patch-aa
View File

@ -1,683 +0,0 @@
Index: animate.c
===================================================================
--- animate.c 2001/06/09 00:28:23 1.1.1.1
+++ animate.c 2001/06/09 00:30:18
@@ -19,10 +19,19 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
+#if HAVE_FTIME
#include <sys/timeb.h>
+#else
+#include <sys/time.h>
+#include <unistd.h>
+#endif
/* aro - use following headers if using timeval struct
and gettimeofday function below (in case compiler can't
find ftime() function).
@@ -45,8 +54,8 @@
#include <X11/xpm.h>
#endif
-#include "defs.h"
#include "globals.h"
+#include "defs.h"
void echo_to_message_area(char *);
@@ -254,9 +263,12 @@
double phi = rot_angle*PI/180.0, time, last_time = 0.0;
XEvent event;
-
+
+#ifdef HAVE_FTIME
static struct timeb tb;
-
+#else
+ struct timeval tv;
+#endif
/* aro - if xmakemol fails to compile due to use of ftime function,
try uncommenting lines using struct timeval tv, and comment out lines
using struct timeb tb. Also need to uncomment appropiate #include lines
@@ -278,11 +290,16 @@
rotate_atoms(rot_axis,phi,1,True);
/* Get the time */
-
+#ifdef HAVE_FTIME
ftime (&tb);
time = tb.time + (tb.millitm / 1000.0);
+#else
+ gettimeofday(&tv,NULL);
+
+ time= tv.tv_sec + (tv.tv_usec / 1000000.0);
+#endif
/* gettimeofday(&tv, NULL);
time = tv.tv_sec + (tv.tv_usec / 1000000.0); */
Index: bbox.c
===================================================================
--- bbox.c 2001/06/09 00:28:23 1.1.1.1
+++ bbox.c 2001/06/09 00:30:18
@@ -21,18 +21,22 @@
#define __BBOX_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <Xm/Xm.h>
+#include "globals.h"
#include "bbox.h"
#include "defs.h"
#ifdef GL
#include "gl_funcs.h" /* aro - for visinfo */
#endif /* GL */
-#include "globals.h"
#include "view.h"
static int top_point_index;
Index: canvas.c
===================================================================
--- canvas.c 2001/06/09 00:28:23 1.1.1.1
+++ canvas.c 2001/06/09 00:30:18
@@ -19,19 +19,24 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <Xm/Xm.h>
+#include "globals.h"
+
#include "bonds.h"
#include "defs.h"
#include "draw.h"
#ifdef GL
#include "gl_funcs.h" /* aro */
#endif /* GL */
-#include "globals.h"
#include "view.h"
#ifdef XPM
Index: config.h
===================================================================
--- config.h 2001/06/09 00:28:24 1.1.1.1
+++ config.h 2001/06/09 00:30:18
@@ -1,24 +1,107 @@
-/*
+/* config.h. Generated automatically by configure. */
+/* config.h.in. Generated automatically from configure.in by autoheader. */
-Copyright (C) 1999 Matthew P. Hodges
-This file is part of XMakemol.
+/* Define if using alloca.c. */
+/* #undef C_ALLOCA */
-XMakemol is free software; you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2, or (at your option)
-any later version.
+/* Define to empty if the keyword does not work. */
+/* #undef const */
-XMakemol is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-GNU General Public License for more details.
+/* Define to one of _getb67, GETB67, getb67 for Cray-2 and Cray-YMP systems.
+ This function is required for alloca.c support on those systems. */
+/* #undef CRAY_STACKSEG_END */
-You should have received a copy of the GNU General Public License
-along with XMakemol; see the file COPYING. If not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+/* Define if you have alloca, as a function or macro. */
+#define HAVE_ALLOCA 1
-*/
+/* Define if you have <alloca.h> and it should be used (not on Ultrix). */
+/* #undef HAVE_ALLOCA_H */
-/* If usleep is available, define HAVE_USLEEP */
+/* If using the C implementation of alloca, define if you know the
+ direction of stack growth for your system; otherwise it will be
+ automatically deduced at run-time.
+ STACK_DIRECTION > 0 => grows toward higher addresses
+ STACK_DIRECTION < 0 => grows toward lower addresses
+ STACK_DIRECTION = 0 => direction of growth unknown
+ */
+/* #undef STACK_DIRECTION */
-#define HAVE_USLEEP
+/* Define if you have the ANSI C header files. */
+#define STDC_HEADERS 1
+
+/* Define if the X Window System is missing or not being used. */
+/* #undef X_DISPLAY_MISSING */
+
+/* #undef HAVE_LIBGEN */
+#define HAVE_MOTIF 1
+#define XPM 1
+#define VERSION "4.40.2b"
+/* #undef GL */
+
+/* Define if using alloca.c. */
+/* #undef C_ALLOCA */
+
+/* Define to empty if the keyword does not work. */
+/* #undef const */
+
+/* Define to one of _getb67, GETB67, getb67 for Cray-2 and Cray-YMP systems.
+ This function is required for alloca.c support on those systems. */
+/* #undef CRAY_STACKSEG_END */
+
+/* Define if you have alloca, as a function or macro. */
+#define HAVE_ALLOCA 1
+
+/* Define if you have <alloca.h> and it should be used (not on Ultrix). */
+/* #undef HAVE_ALLOCA_H */
+
+/* If using the C implementation of alloca, define if you know the
+ direction of stack growth for your system; otherwise it will be
+ automatically deduced at run-time.
+ STACK_DIRECTION > 0 => grows toward higher addresses
+ STACK_DIRECTION < 0 => grows toward lower addresses
+ STACK_DIRECTION = 0 => direction of growth unknown
+ */
+/* #undef STACK_DIRECTION */
+
+/* Define if you have the ANSI C header files. */
+#define STDC_HEADERS 1
+
+/* Define if the X Window System is missing or not being used. */
+/* #undef X_DISPLAY_MISSING */
+
+/* Define if you have the ftime function. */
+/* #undef HAVE_FTIME */
+
+/* Define if you have the strstr function. */
+#define HAVE_STRSTR 1
+
+/* Define if you have the usleep function. */
+#define HAVE_USLEEP 1
+
+/* Define if you have the <X11/xpm.h> header file. */
+#define HAVE_X11_XPM_H 1
+
+/* Define if you have the <unistd.h> header file. */
+#define HAVE_UNISTD_H 1
+
+/* Name of package */
+#define PACKAGE "xmakemol"
+
+/* Version number of package */
+#define VERSION "4.40.2b"
+
+/* Define this to use OpenGL widget from <GL/GLwDrawA.h> */
+/* #undef HAVE_GL_GLWDRAWA_H */
+
+/* Define this to use OpenGL widget from <X11/GLw/GLwDrawA.h> */
+/* #undef HAVE_X11_GLW_GLWDRAWA_H */
+
+/* Define this to use OpenGL widget from <GL/GLwMDrawA.h> */
+/* #undef HAVE_GL_GLWMDRAWA_H */
+
+/* Define this to use OpenGL widget from <X11/GLw/GLwMDrawA.h> */
+/* #undef HAVE_X11_GLW_GLWMDRAWA_H */
+
+/* Define this to the Xt/Motif OpenGL widget class to use */
+/* #undef XT_GLWIDGET */
+
Index: control.c
===================================================================
--- control.c 2001/06/09 00:28:23 1.1.1.1
+++ control.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: draw.c
===================================================================
--- draw.c 2001/06/09 00:28:23 1.1.1.1
+++ draw.c 2001/06/09 00:30:17
@@ -21,6 +21,10 @@
#define __DRAW_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
Index: edit.c
===================================================================
--- edit.c 2001/06/09 00:28:23 1.1.1.1
+++ edit.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: file.c
===================================================================
--- file.c 2001/06/09 00:28:23 1.1.1.1
+++ file.c 2001/06/09 00:30:17
@@ -21,7 +21,13 @@
#define __FILE_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
+#if HAVE_ALLOCA_H
#include <alloca.h>
+#endif
#include <ctype.h> /* aro - needed for isalnum() */
#include <locale.h>
#include <math.h>
@@ -40,13 +46,13 @@
#include <Xm/TextF.h> /* aro */
#include <Xm/ToggleB.h> /* aro */
+#include "globals.h"
#include "bonds.h"
#include "defs.h"
#include "draw.h"
#ifdef GL
#include "gl_funcs.h" /* aro - for visinfo */
#endif /* GL */
-#include "globals.h"
#include "view.h"
#ifdef XPM
Index: frames.c
===================================================================
--- frames.c 2001/06/09 00:28:23 1.1.1.1
+++ frames.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
@@ -38,7 +42,9 @@
#include <X11/xpm.h>
#endif
+#ifdef HAVE_CONFIG_H
#include "config.h"
+#endif
#include "draw.h"
#include "globals.h"
Index: gl_funcs.c
===================================================================
--- gl_funcs.c 2001/06/09 00:28:23 1.1.1.1
+++ gl_funcs.c 2001/06/09 00:30:17
@@ -19,18 +19,23 @@
*/
-#ifdef GL
#define __GL_FUNCS_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <math.h>
#include <Xm/Xm.h>
+#include "globals.h"
+
+#ifdef GL
#include "bonds.h"
#include "defs.h"
#include "draw.h"
-#include "globals.h"
#include "view.h"
#include "gl_funcs.h"
@@ -271,8 +276,7 @@
XpmWriteFileFromPixmap is called and canvas_pm is used. */
XCopyArea (display, XtWindow (canvas), canvas_pm, gc, 0, 0,
- canvas_width, canvas_width, 0, 0);
-
+ canvas_width, canvas_width, 0, 0);
}
void StereoProjection(float left, float right, float bottom, float top,
Index: globals.h
===================================================================
--- globals.h 2001/06/09 00:28:24 1.1.1.1
+++ globals.h 2001/06/09 00:30:17
@@ -19,6 +19,7 @@
*/
+
#ifndef __GLOBALS_H__
#define __GLOBALS_H__
Index: help.c
===================================================================
--- help.c 2001/06/09 00:28:23 1.1.1.1
+++ help.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
@@ -81,7 +85,7 @@
if(about_string == NULL)
{
- about_string = malloc(sizeof(ABOUT_MSG));
+ about_string = malloc(sizeof(ABOUT_MSG)+sizeof(VERSION));
}
sprintf(about_string, ABOUT_MSG, VERSION);
Index: menus.c
===================================================================
--- menus.c 2001/06/09 00:28:23 1.1.1.1
+++ menus.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <Xm/Xm.h>
#include "globals.h"
Index: region.c
===================================================================
--- region.c 2001/06/09 00:28:23 1.1.1.1
+++ region.c 2001/06/09 00:30:17
@@ -24,6 +24,10 @@
/* Functions to define a region on the canvas and to determine which
atoms lie inside it */
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <stdlib.h>
Index: rotate.c
===================================================================
--- rotate.c 2001/06/09 00:28:23 1.1.1.1
+++ rotate.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: sort.c
===================================================================
--- sort.c 2001/06/09 00:28:23 1.1.1.1
+++ sort.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: store.c
===================================================================
--- store.c 2001/06/09 00:28:23 1.1.1.1
+++ store.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: track.c
===================================================================
--- track.c 2001/06/09 00:28:23 1.1.1.1
+++ track.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: translate.c
===================================================================
--- translate.c 2001/06/09 00:28:23 1.1.1.1
+++ translate.c 2001/06/09 00:30:17
@@ -19,6 +19,10 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
Index: utils.c
===================================================================
--- utils.c 2001/06/09 00:28:23 1.1.1.1
+++ utils.c 2001/06/09 00:30:17
@@ -19,13 +19,19 @@
*/
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <Xm/MessageB.h>
+#ifdef HAVE_CONFIG_H
#include "config.h"
+#endif
#include "defs.h"
#include "globals.h"
Index: vectors.c
===================================================================
--- vectors.c 2001/06/09 00:28:24 1.1.1.1
+++ vectors.c 2001/06/09 00:30:17
@@ -21,6 +21,10 @@
#define __VECTORS_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
Index: view.c
===================================================================
--- view.c 2001/06/09 00:28:23 1.1.1.1
+++ view.c 2001/06/09 00:30:17
@@ -21,6 +21,10 @@
#define __VIEW_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
Index: xmakemol.c
===================================================================
--- xmakemol.c 2001/06/09 00:28:24 1.1.1.1
+++ xmakemol.c 2001/06/09 00:30:18
@@ -21,6 +21,10 @@
#define __XMAKEMOL_C__
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
#include <locale.h>
#include <math.h>
#include <stdio.h>
@@ -31,8 +35,8 @@
#include <Xm/Label.h>
#include <Xm/MainW.h>
-#include "defs.h"
#include "globals.h"
+#include "defs.h"
#include "view.h"
/* aro - might not be necessary if using mesa+linux */

10209
science/xmakemol/files/patch-ab
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6
science/xmakemol/files/patch-ac
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@ -1,6 +0,0 @@
Index: NEWS
===================================================================
--- NEWS 2001/06/09 00:31:56 1.1
+++ NEWS 2001/06/09 00:44:46
@@ -0,0 +1 @@
+Dummy file now

2
science/xmakemol/pkg-descr
View File

@ -18,7 +18,7 @@ XMakemol can also produce a series of xpm files which can be translated into an
gmake_anim.pl). The one above is an animation of the "viagra" molecule
(sidenafil).
WWW: http://vegemite.chem.nottingham.ac.uk/~xmakemol/
WWW: http://www.nongnu.org/xmakemol/
Chi Zhang
chizhang@uchicago.edu

1
science/xmakemol/pkg-plist
View File

@ -1,3 +1,4 @@
share/xmakemol/elements
bin/xmake_anim.pl
bin/xmakemol
@dirrm share/xmakemol