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Code Issues Releases Activity

biology/ngs-sdk: Update 2.10.4 -> 2.10.5

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Reported by:	portscout
This commit is contained in:
Yuri Victorovich 2020-04-04 20:09:00 +00:00
parent b994f92ad1
commit 1a6b2f5c2c
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=530713
4 changed files with 12 additions and 12 deletions
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2
biology/ngs-sdk/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= ngs
DISTVERSION= 2.10.4
DISTVERSION= 2.10.5
CATEGORIES= biology
PKGNAMESUFFIX= -sdk

6
biology/ngs-sdk/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1583611036
SHA256 (ncbi-ngs-2.10.4_GH0.tar.gz) = 6f5db2269c6afc8e51a50fbcab9c63f4b1d6b69e483c6acb40d8f9e52f8282b1
SIZE (ncbi-ngs-2.10.4_GH0.tar.gz) = 1093978
TIMESTAMP = 1586029714
SHA256 (ncbi-ngs-2.10.5_GH0.tar.gz) = c39ee65a625e3646e0212c5d8be846e45d368c644a053d3b54cf63f53853f02f
SIZE (ncbi-ngs-2.10.5_GH0.tar.gz) = 1099528

14
biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl
View File

@ -1,4 +1,4 @@
--- ngs-sdk/setup/konfigure.perl.orig 2019-08-20 18:05:02 UTC
--- ngs-sdk/setup/konfigure.perl.orig 2020-04-01 16:34:36 UTC
+++ ngs-sdk/setup/konfigure.perl
@@ -202,7 +202,7 @@ print "checking system type... " unless ($AUTORUN);
my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
@ -20,12 +20,11 @@
print "checking machine architecture... " unless ($AUTORUN);
println $MARCH unless ($AUTORUN);
unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
@@ -332,6 +336,16 @@ if ($OSTYPE =~ /linux/i) {
$EXEX = '';
@@ -333,6 +337,16 @@ if ($OSTYPE =~ /linux/i) {
$OSINC = 'unix';
$TOOLS = 'gcc' unless ($TOOLS);
$PYTHON = 'python';
+} elsif ($OSTYPE =~ /freebsd/i) {
+ $BITS = '';
+ $LPFX = 'lib';
+ $OBJX = 'o';
+ $LOBX = 'pic.o';
@ -34,10 +33,11 @@
+ $EXEX = '';
+ $OSINC = 'unix';
+ $TOOLS = 'clang' unless ($TOOLS);
+ $PYTHON = 'python';
} elsif ($OSTYPE =~ /darwin/i) {
$LPFX = 'lib';
$OBJX = 'o';
@@ -377,11 +391,11 @@ if ($TOOLS =~ /gcc$/) {
@@ -379,11 +393,11 @@ if ($TOOLS =~ /gcc$/) {
} elsif ($TOOLS eq 'clang') {
$CPP = 'clang++' unless ($CPP);
$CC = 'clang -c';
@ -51,7 +51,7 @@
$AR = 'ar rc';
$LD = "clang $ARCH_FL";
$LP = "$CPP $versionMin $ARCH_FL";
@@ -478,7 +492,7 @@ foreach my $href (DEPENDS()) {
@@ -508,7 +522,7 @@ foreach my $href (DEPENDS()) {
$I = $t if (-e $t);
}
push ( @L, File::Spec->catdir($OPT{$o}, 'lib') );
@ -60,7 +60,7 @@
}
my ($i, $l) = find_lib($_, $I, @L);
if (defined $i || $l) {
@@ -898,8 +912,7 @@ EndText
@@ -929,8 +943,7 @@ EndText
L($F, "PIC = $PIC") if ($PIC);
if ($PKG{LNG} eq 'C') {
if ($TOOLS =~ /clang/i) {

2
biology/ngs-sdk/pkg-plist
View File

@ -92,4 +92,4 @@ lib/libngs-adapt-c++.a
lib/libngs-c++.a
lib/libngs-sdk.so
lib/libngs-sdk.so.2
lib/libngs-sdk.so.2.10.4
lib/libngs-sdk.so.2.10.5