mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-12-26 05:02:18 +00:00
Code Issues Releases Activity

New port: misc/adios2: Next generation of ADIOS developed in the Exascale Computing Program

Browse Source
This commit is contained in:
Yuri Victorovich 2019-07-28 10:26:50 +00:00
parent 01107771c8
commit 1c4b8dcbea
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=507507
6 changed files with 223 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
misc/Makefile
View File

@ -8,6 +8,7 @@
SUBDIR += achievo
SUBDIR += aclgen
SUBDIR += actiona
SUBDIR += adios2
SUBDIR += amanda-client
SUBDIR += amanda-perl-wrapper
SUBDIR += amanda-server

32
misc/adios2/Makefile Normal file
View File

@ -0,0 +1,32 @@
# $FreeBSD$
PORTNAME= adios2
DISTVERSIONPREFIX= v
DISTVERSION= 2.4.0
CATEGORIES= misc science
MAINTAINER= yuri@FreeBSD.org
COMMENT= Next generation of ADIOS developed in the Exascale Computing Program
LICENSE= APACHE20
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= bash:shells/bash
LIB_DEPENDS= libblosc.so:archivers/c-blosc \
libfabric.so:net/libfabric \
libffi.so:devel/libffi \
libmpi.so:net/openmpi \
libpng16.so:graphics/png \
libzfp.so:devel/zfp
RUN_DEPENDS= bash:shells/bash
USES= bison cmake pkgconfig perl5 python shebangfix
SHEBANG_FILES= cmake/install/post/adios2-config.pre.sh.in cmake/install/post/generate-adios2-config.sh.in source/utils/bp4dbg/bp4dbg.py
USE_GITHUB= yes
GH_ACCOUNT= ornladios
GH_PROJECT= ADIOS2
USE_LDCONFIG= yes
CMAKE_OFF= BUILD_TESTING
.include <bsd.port.mk>

3
misc/adios2/distinfo Normal file
View File

@ -0,0 +1,3 @@
TIMESTAMP = 1564305208
SHA256 (ornladios-ADIOS2-v2.4.0_GH0.tar.gz) = 50ecea04b1e41c88835b4b3fd4e7bf0a0a2a3129855c9cc4ba6cf6a1575106e2
SIZE (ornladios-ADIOS2-v2.4.0_GH0.tar.gz) = 5563369

30
misc/adios2/files/patch-source_adios2_toolkit_profiling_taustubs_tautimer.cpp Normal file
View File

@ -0,0 +1,30 @@
--- source/adios2/toolkit/profiling/taustubs/tautimer.cpp.orig 2019-07-28 09:15:02 UTC
+++ source/adios2/toolkit/profiling/taustubs/tautimer.cpp
@@ -21,6 +21,9 @@
#include <sys/syscall.h>
#include <sys/types.h>
#include <thread>
+#if defined(__FreeBSD__) || defined(__DragonFly__)
+#include <pthread_np.h>
+#endif
/* Clean assertion handling */
inline void _tautimer_assert(const char *expression, const char *file, int line)
@@ -204,6 +207,8 @@ TauTimer::TauTimer(void) : initialized(false)
#if defined(__APPLE__) && defined(__MACH__)
// why should Apple support gettid? BE DIFFERENT, BABY!
pthread_threadid_np(NULL, &mytid);
+#elif defined(__FreeBSD__) || defined(__DragonFly__)
+ mytid = pthread_getthreadid_np();
#else
mytid = (uint64_t)syscall(__NR_gettid);
#endif
@@ -232,6 +237,8 @@ inline void TauTimer::_RegisterThread(void)
#if defined(__APPLE__) && defined(__MACH__)
// why should Apple support gettid? BE DIFFERENT, BABY!
pthread_threadid_np(NULL, &mytid);
+#elif defined(__FreeBSD__) || defined(__DragonFly__)
+ mytid = pthread_getthreadid_np();
#else
mytid = (uint64_t)syscall(__NR_gettid);
#endif

21
misc/adios2/pkg-descr Normal file
View File

@ -0,0 +1,21 @@
The Adaptable Input/Output (I/O) System, ADIOS 2 is developed as part of the
United States Department of Energy's Exascale Computing Program.
ADIOS 2 is a framework designed for scientific data I/O to publish and subscribe
(put/get) data when and where required.
ADIOS 2 transports data as groups of self-describing variables and attributes
across different media types (such as files, wide-area-networks, and remote
direct memory access) using a common application programming interface for all
transport modes. ADIOS 2 can be used on supercomputers, commercial clouds, and
personal computers.
ADIOS 2 focuses on:
* Performance I/O scalability in high performance computing (HPC) applications.
* Adaptability unified interfaces to allow for several modes of transport
(files, memory-to-memory)
* Ease of Use two-level application programming interface (APIs)
* Full APIs for HPC applications: C++11, Fortran 90, C 99, Python 2 and 3
* Simplified High-Level APIs for data analysis: Python 2 and 3, C++11, Matlab
WWW: https://github.com/ornladios/ADIOS2

136
misc/adios2/pkg-plist Normal file
View File

@ -0,0 +1,136 @@
bin/adios2-config
bin/adios_iotest
bin/adios_reorganize
bin/bp4dbg/bp4dbg.py
bin/bp4dbg/bp4dbg_data.py
bin/bp4dbg/bp4dbg_idxtable.py
bin/bp4dbg/bp4dbg_metadata.py
bin/bp4dbg/bp4dbg_utils.py
bin/bpls
bin/sst_conn_tool
include/adios2.h
include/adios2/c/adios2_c_adios.h
include/adios2/c/adios2_c_attribute.h
include/adios2/c/adios2_c_engine.h
include/adios2/c/adios2_c_io.h
include/adios2/c/adios2_c_operator.h
include/adios2/c/adios2_c_types.h
include/adios2/c/adios2_c_variable.h
include/adios2/common/ADIOSConfig.h
include/adios2/common/ADIOSMacros.h
include/adios2/common/ADIOSTypes.h
include/adios2/common/ADIOSTypes.inl
include/adios2/cxx11/ADIOS.h
include/adios2/cxx11/ADIOS.inl
include/adios2/cxx11/Attribute.h
include/adios2/cxx11/Engine.h
include/adios2/cxx11/IO.h
include/adios2/cxx11/Operator.h
include/adios2/cxx11/Types.h
include/adios2/cxx11/Variable.h
include/adios2/cxx11/fstream/ADIOS2fstream.h
include/adios2/toolkit/sst/SSTConfig.h
include/adios2_c.h
lib/cmake/adios2/CMakeFindDependencyMacro.cmake
lib/cmake/adios2/FindBZip2.cmake
lib/cmake/adios2/FindBlosc.cmake
lib/cmake/adios2/FindCrayDRC.cmake
lib/cmake/adios2/FindHDF5.cmake
lib/cmake/adios2/FindLIBFABRIC.cmake
lib/cmake/adios2/FindMGARD.cmake
lib/cmake/adios2/FindMPI.cmake
lib/cmake/adios2/FindPkgConfig.cmake
lib/cmake/adios2/FindPythonFull.cmake
lib/cmake/adios2/FindPythonModule.cmake
lib/cmake/adios2/FindSZ.cmake
lib/cmake/adios2/FindZFP.cmake
lib/cmake/adios2/FindZeroMQ.cmake
lib/cmake/adios2/adios2-config-common.cmake
lib/cmake/adios2/adios2-config-version.cmake
lib/cmake/adios2/adios2-config.cmake
lib/cmake/adios2/adios2-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/adios2/adios2-targets.cmake
lib/cmake/adios2/thirdparty/EVPathConfig.cmake
lib/cmake/adios2/thirdparty/EVPathConfigCommon.cmake
lib/cmake/adios2/thirdparty/EVPathConfigVersion.cmake
lib/cmake/adios2/thirdparty/EVPathTargets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/adios2/thirdparty/EVPathTargets.cmake
lib/cmake/adios2/thirdparty/FindBinUtils.cmake
lib/cmake/adios2/thirdparty/FindCERCSProject.cmake
lib/cmake/adios2/thirdparty/FindIBVERBS.cmake
lib/cmake/adios2/thirdparty/FindLIBFABRIC.cmake
lib/cmake/adios2/thirdparty/FindLibFFI.cmake
lib/cmake/adios2/thirdparty/FindNNTI.cmake
lib/cmake/adios2/thirdparty/FindNVML.cmake
lib/cmake/adios2/thirdparty/FindPkgConfig.cmake
lib/cmake/adios2/thirdparty/atl-config-version.cmake
lib/cmake/adios2/thirdparty/atl-config.cmake
lib/cmake/adios2/thirdparty/atl-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/adios2/thirdparty/atl-targets.cmake
lib/cmake/adios2/thirdparty/dill-config-common.cmake
lib/cmake/adios2/thirdparty/dill-config-version.cmake
lib/cmake/adios2/thirdparty/dill-config.cmake
lib/cmake/adios2/thirdparty/dill-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/adios2/thirdparty/dill-targets.cmake
lib/cmake/adios2/thirdparty/enet-config-version.cmake
lib/cmake/adios2/thirdparty/enet-config.cmake
lib/cmake/adios2/thirdparty/enet-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/adios2/thirdparty/enet-targets.cmake
lib/cmake/adios2/thirdparty/ffs-config-version.cmake
lib/cmake/adios2/thirdparty/ffs-config.cmake
lib/cmake/adios2/thirdparty/ffs-targets-%%CMAKE_BUILD_TYPE%%.cmake
lib/cmake/adios2/thirdparty/ffs-targets.cmake
lib/cmake/adios2/thirdparty/upstream/FindPkgConfig.cmake
lib/cmake/adios2/upstream/CMakeFindDependencyMacro.cmake
lib/cmake/adios2/upstream/FindBZip2.cmake
lib/cmake/adios2/upstream/FindHDF5.cmake
lib/cmake/adios2/upstream/FindMPI.cmake
lib/cmake/adios2/upstream/FindMPI/fortranparam_mpi.f90.in
lib/cmake/adios2/upstream/FindMPI/libver_mpi.c
lib/cmake/adios2/upstream/FindMPI/libver_mpi.f90.in
lib/cmake/adios2/upstream/FindMPI/mpiver.f90.in
lib/cmake/adios2/upstream/FindMPI/test_mpi.c
lib/cmake/adios2/upstream/FindMPI/test_mpi.cxx
lib/cmake/adios2/upstream/FindMPI/test_mpi.f90.in
lib/cmake/adios2/upstream/FindMPI/test_mpi_c.cxx
lib/cmake/adios2/upstream/FindPkgConfig.cmake
lib/cmake/adios2/upstream/GoogleTest.cmake
lib/libadios2.so
lib/libadios2.so.2
lib/libadios2.so.2.4.0
lib/libadios2_atl.so
lib/libadios2_atl.so.2
lib/libadios2_atl.so.2.2.1
lib/libadios2_cmenet.so
lib/libadios2_cmfabric.so
lib/libadios2_cmib.so
lib/libadios2_cmmulticast.so
lib/libadios2_cmselect.so
lib/libadios2_cmsockets.so
lib/libadios2_cmudp.so
lib/libadios2_dill.so
lib/libadios2_dill.so.2
lib/libadios2_dill.so.2.4.0
lib/libadios2_enet.so
lib/libadios2_enet.so.1
lib/libadios2_enet.so.1.3.14
lib/libadios2_evpath.so
lib/libadios2_ffs.so
lib/libadios2_ffs.so.1
lib/libadios2_ffs.so.1.6.0
lib/libadios2_sst.so
lib/libadios2_sst.so.2
lib/libadios2_sst.so.2.4.0
lib/libtaustubs.so
share/iotest-config/coupling2.xml
share/iotest-config/coupling2_blocking_01_simple.txt
share/iotest-config/coupling2_blocking_02_dump_result.txt
share/iotest-config/pipe2.xml
share/iotest-config/pipe2_01_simple.txt
share/iotest-config/pipe2_02_link.txt
share/iotest-config/pipe2_03_conditional.txt
share/iotest-config/pipe2_04_nonblocking.txt
share/iotest-config/pipe2_05_add_variables.txt
share/iotest-config/pipe2_06_busy.txt
share/iotest-config/wf_2_to_1.txt
share/iotest-config/wf_2_to_1.xml