mirror of
https://git.FreeBSD.org/ports.git
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biology/pbseqan: Remove expired port
2024-05-05 biology/pbseqan: Upstream merged into SeqAn project: Use biology/seqan
This commit is contained in:
Rene Ladan
parent
010d804bef
commit
2248d57ea5
1
MOVED
1
MOVED
@ -3232,3 +3232,4 @@ lang/gcc48||2024-05-01|Has expired: Unsupported by upstream since 2015. Use GCC
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multimedia/rubygem-paperclip-av-transcoder-rails50||2024-05-04|Has expired: Depends on deprecated port devel/rubygem-paperclip-rails50
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devel/rubygem-paperclip-rails50||2024-05-04|Has expired: Upstream repo archived Jul 13, 2023. Upstream recommends using Rails' own ActiveStorage
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devel/rubygem-paperclip-rails5||2024-05-04|Has expired: Upstream repo archived Jul 13, 2023. Upstream recommends using Rails' own ActiveStorage
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biology/pbseqan|biology/seqan|2024-05-05|Has expired: Upstream merged into SeqAn project: Use biology/seqan
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@ -142,7 +142,6 @@
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SUBDIR += p5-transdecoder
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SUBDIR += paml
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SUBDIR += pbbam
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SUBDIR += pbseqan
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SUBDIR += peak-classifier
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SUBDIR += pear-merger
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SUBDIR += phrap
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@ -1,30 +0,0 @@
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PORTNAME= pbseqan
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DISTVERSION= g20171011
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CATEGORIES= biology
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# As of March 2018, unanimity is no longer open source.
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# See https://github.com/PacificBiosciences/ccs.
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Pacific Biosciences patched and stripped down SeqAn
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WWW= https://github.com/PacificBiosciences/seqan
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LICENSE= BSD3CLAUSE
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LICENSE_FILE= ${WRKSRC}/LICENSE
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DEPRECATED= Upstream merged into SeqAn project: Use biology/seqan
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EXPIRATION_DATE= 2024-05-05
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USE_GITHUB= yes
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GH_ACCOUNT= PacificBiosciences
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GH_PROJECT= seqan
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GH_TAGNAME= 21d95d737d8decb5cc3693b9065d81e831e7f57d
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NO_BUILD= yes
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NO_ARCH= yes
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do-install:
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@${MKDIR} ${STAGEDIR}${PREFIX}/include/PacBio
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cd ${WRKSRC}/include/seqan && \
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${COPYTREE_SHARE} . ${STAGEDIR}${PREFIX}/include/PacBio/seqan
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.include <bsd.port.mk>
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@ -1,3 +0,0 @@
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TIMESTAMP = 1550366556
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SHA256 (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = dcdc564c877190089bd691ab4097164266e675217645613426fb1ff44029da8c
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SIZE (PacificBiosciences-seqan-g20171011-21d95d737d8decb5cc3693b9065d81e831e7f57d_GH0.tar.gz) = 1527033
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@ -1,9 +0,0 @@
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This is a public fork of the SeqAn Library v2.0.0, stripped down to just the
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header files and with a few custom fixes.
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Some of PacBio's tools depend on SeqAn for efficient implementations of some
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common data-structures for sequence analysis (A huge thanks to SeqAn
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development team!). However PacBio only uses a small amount of the SeqAn
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code-base, and in addition requires a few minor fixes that didn't make it in to
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the initial release of SeqAn v2.0.0. Thus to minimize confusion and band-width,
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we will depend on this fork instead of SeqAn proper.
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@ -1,657 +0,0 @@
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include/PacBio/seqan/LICENSE
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include/PacBio/seqan/align.h
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include/PacBio/seqan/align/align_base.h
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include/PacBio/seqan/align/align_cols.h
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include/PacBio/seqan/align/align_config.h
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include/PacBio/seqan/align/align_iterator_base.h
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include/PacBio/seqan/align/align_metafunctions.h
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include/PacBio/seqan/align/align_traceback.h
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include/PacBio/seqan/align/alignment_algorithm_tags.h
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include/PacBio/seqan/align/alignment_operations.h
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include/PacBio/seqan/align/dp_algorithm_impl.h
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include/PacBio/seqan/align/dp_band.h
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include/PacBio/seqan/align/dp_cell.h
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include/PacBio/seqan/align/dp_cell_affine.h
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include/PacBio/seqan/align/dp_cell_dynamic.h
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include/PacBio/seqan/align/dp_cell_linear.h
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include/PacBio/seqan/align/dp_context.h
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include/PacBio/seqan/align/dp_formula.h
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include/PacBio/seqan/align/dp_formula_affine.h
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include/PacBio/seqan/align/dp_formula_dynamic.h
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include/PacBio/seqan/align/dp_formula_linear.h
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include/PacBio/seqan/align/dp_matrix.h
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include/PacBio/seqan/align/dp_matrix_navigator.h
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include/PacBio/seqan/align/dp_matrix_navigator_score_matrix.h
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include/PacBio/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
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include/PacBio/seqan/align/dp_matrix_navigator_trace_matrix.h
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include/PacBio/seqan/align/dp_matrix_sparse.h
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include/PacBio/seqan/align/dp_meta_info.h
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include/PacBio/seqan/align/dp_profile.h
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include/PacBio/seqan/align/dp_scout.h
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include/PacBio/seqan/align/dp_setup.h
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include/PacBio/seqan/align/dp_trace_segment.h
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include/PacBio/seqan/align/dp_traceback_adaptor.h
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include/PacBio/seqan/align/dp_traceback_impl.h
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include/PacBio/seqan/align/evaluate_alignment.h
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include/PacBio/seqan/align/fragment.h
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include/PacBio/seqan/align/gap_anchor.h
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include/PacBio/seqan/align/gapped_value_type.h
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include/PacBio/seqan/align/gaps_anchor.h
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include/PacBio/seqan/align/gaps_array.h
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include/PacBio/seqan/align/gaps_base.h
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include/PacBio/seqan/align/gaps_iterator_anchor.h
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include/PacBio/seqan/align/gaps_iterator_array.h
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include/PacBio/seqan/align/gaps_iterator_base.h
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include/PacBio/seqan/align/global_alignment_banded.h
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include/PacBio/seqan/align/global_alignment_hirschberg_impl.h
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include/PacBio/seqan/align/global_alignment_myers_hirschberg_impl.h
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include/PacBio/seqan/align/global_alignment_myers_impl.h
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include/PacBio/seqan/align/global_alignment_specialized.h
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include/PacBio/seqan/align/global_alignment_unbanded.h
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include/PacBio/seqan/align/local_alignment_banded.h
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include/PacBio/seqan/align/local_alignment_banded_waterman_eggert_impl.h
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include/PacBio/seqan/align/local_alignment_enumeration.h
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include/PacBio/seqan/align/local_alignment_enumeration_banded.h
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include/PacBio/seqan/align/local_alignment_enumeration_unbanded.h
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include/PacBio/seqan/align/local_alignment_unbanded.h
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include/PacBio/seqan/align/local_alignment_waterman_eggert_impl.h
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include/PacBio/seqan/align/matrix_base.h
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include/PacBio/seqan/align_extend.h
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include/PacBio/seqan/align_extend/align_extend.h
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include/PacBio/seqan/align_extend/align_extend_base.h
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include/PacBio/seqan/align_extend/dp_scout_xdrop.h
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include/PacBio/seqan/align_profile.h
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include/PacBio/seqan/align_profile/add_to_profile.h
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include/PacBio/seqan/align_profile/score_profile_seq.h
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include/PacBio/seqan/align_split.h
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include/PacBio/seqan/align_split/align_split_interface.h
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include/PacBio/seqan/align_split/dp_scout_split.h
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include/PacBio/seqan/alignment_free.h
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include/PacBio/seqan/alignment_free/af_d2.h
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include/PacBio/seqan/alignment_free/af_d2star.h
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include/PacBio/seqan/alignment_free/af_d2z.h
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include/PacBio/seqan/alignment_free/af_n2.h
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include/PacBio/seqan/alignment_free/alignment_free_base.h
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include/PacBio/seqan/alignment_free/alignment_free_comparison.h
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include/PacBio/seqan/alignment_free/kmer_functions.h
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include/PacBio/seqan/arg_parse.h
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include/PacBio/seqan/arg_parse/arg_parse_argument.h
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include/PacBio/seqan/arg_parse/arg_parse_ctd_support.h
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include/PacBio/seqan/arg_parse/arg_parse_doc.h
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include/PacBio/seqan/arg_parse/arg_parse_exceptions.h
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include/PacBio/seqan/arg_parse/arg_parse_option.h
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include/PacBio/seqan/arg_parse/arg_parse_parse.h
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include/PacBio/seqan/arg_parse/arg_parse_type_support.h
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include/PacBio/seqan/arg_parse/argument_parser.h
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include/PacBio/seqan/arg_parse/tool_doc.h
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include/PacBio/seqan/arg_parse/xml_support.h
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include/PacBio/seqan/bam_io.h
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include/PacBio/seqan/bam_io/bam_alignment_record.h
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include/PacBio/seqan/bam_io/bam_alignment_record_util.h
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include/PacBio/seqan/bam_io/bam_file.h
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include/PacBio/seqan/bam_io/bam_header_record.h
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include/PacBio/seqan/bam_io/bam_index_bai.h
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include/PacBio/seqan/bam_io/bam_io_context.h
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include/PacBio/seqan/bam_io/bam_sam_conversion.h
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include/PacBio/seqan/bam_io/bam_scanner_cache.h
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include/PacBio/seqan/bam_io/bam_tags_dict.h
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include/PacBio/seqan/bam_io/cigar.h
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include/PacBio/seqan/bam_io/read_bam.h
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include/PacBio/seqan/bam_io/read_sam.h
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include/PacBio/seqan/bam_io/write_bam.h
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include/PacBio/seqan/bam_io/write_sam.h
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include/PacBio/seqan/basic.h
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include/PacBio/seqan/basic/aggregate_concept.h
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include/PacBio/seqan/basic/allocator_chunkpool.h
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include/PacBio/seqan/basic/allocator_interface.h
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include/PacBio/seqan/basic/allocator_multipool.h
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include/PacBio/seqan/basic/allocator_simple.h
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include/PacBio/seqan/basic/allocator_singlepool.h
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include/PacBio/seqan/basic/allocator_to_std.h
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include/PacBio/seqan/basic/alphabet_adapt_builtins.h
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include/PacBio/seqan/basic/alphabet_bio.h
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include/PacBio/seqan/basic/alphabet_concept.h
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include/PacBio/seqan/basic/alphabet_math.h
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include/PacBio/seqan/basic/alphabet_profile.h
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include/PacBio/seqan/basic/alphabet_qualities.h
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include/PacBio/seqan/basic/alphabet_residue.h
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include/PacBio/seqan/basic/alphabet_residue_funcs.h
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include/PacBio/seqan/basic/alphabet_residue_tabs.h
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include/PacBio/seqan/basic/alphabet_simple_type.h
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include/PacBio/seqan/basic/alphabet_storage.h
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include/PacBio/seqan/basic/array_construct_destruct.h
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include/PacBio/seqan/basic/basic_aggregate.h
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include/PacBio/seqan/basic/basic_allocator.h
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include/PacBio/seqan/basic/basic_alphabet.h
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include/PacBio/seqan/basic/basic_concept.h
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include/PacBio/seqan/basic/basic_container.h
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include/PacBio/seqan/basic/basic_debug.h
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include/PacBio/seqan/basic/basic_device.h
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include/PacBio/seqan/basic/basic_exception.h
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include/PacBio/seqan/basic/basic_functors.h
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include/PacBio/seqan/basic/basic_fundamental.h
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include/PacBio/seqan/basic/basic_iterator.h
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include/PacBio/seqan/basic/basic_math.h
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include/PacBio/seqan/basic/basic_metaprogramming.h
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include/PacBio/seqan/basic/basic_parallelism.h
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include/PacBio/seqan/basic/basic_proxy.h
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include/PacBio/seqan/basic/basic_simd_vector.h
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include/PacBio/seqan/basic/basic_smart_pointer.h
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include/PacBio/seqan/basic/basic_stream.h
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include/PacBio/seqan/basic/basic_tangle.h
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include/PacBio/seqan/basic/basic_type.h
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include/PacBio/seqan/basic/basic_view.h
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include/PacBio/seqan/basic/boost_preprocessor_subset.h
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include/PacBio/seqan/basic/builtin_functions.h
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include/PacBio/seqan/basic/concept_checking.h
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include/PacBio/seqan/basic/container_concept.h
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include/PacBio/seqan/basic/debug_helper.h
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include/PacBio/seqan/basic/debug_test_system.h
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include/PacBio/seqan/basic/fundamental_chunking.h
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include/PacBio/seqan/basic/fundamental_comparison.h
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include/PacBio/seqan/basic/fundamental_concepts.h
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include/PacBio/seqan/basic/fundamental_conversion.h
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include/PacBio/seqan/basic/fundamental_metafunctions.h
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include/PacBio/seqan/basic/fundamental_tags.h
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include/PacBio/seqan/basic/fundamental_transport.h
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include/PacBio/seqan/basic/holder_base.h
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include/PacBio/seqan/basic/holder_simple.h
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include/PacBio/seqan/basic/holder_tristate.h
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include/PacBio/seqan/basic/hosted_type_interface.h
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include/PacBio/seqan/basic/iterator_adapt_pointer.h
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include/PacBio/seqan/basic/iterator_adapt_std.h
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include/PacBio/seqan/basic/iterator_adaptor.h
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include/PacBio/seqan/basic/iterator_base.h
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include/PacBio/seqan/basic/iterator_concept.h
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include/PacBio/seqan/basic/iterator_counting.h
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include/PacBio/seqan/basic/iterator_interface.h
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include/PacBio/seqan/basic/iterator_position.h
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include/PacBio/seqan/basic/iterator_range.h
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include/PacBio/seqan/basic/macro_deprecated.h
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include/PacBio/seqan/basic/math_functions.h
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include/PacBio/seqan/basic/math_log_space_value.h
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include/PacBio/seqan/basic/metaprogramming_control.h
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include/PacBio/seqan/basic/metaprogramming_enable_if.h
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include/PacBio/seqan/basic/metaprogramming_logic.h
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include/PacBio/seqan/basic/metaprogramming_math.h
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include/PacBio/seqan/basic/metaprogramming_type.h
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include/PacBio/seqan/basic/metaprogramming_type_algebra.h
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include/PacBio/seqan/basic/pair_base.h
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include/PacBio/seqan/basic/pair_bit_compressed.h
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include/PacBio/seqan/basic/pair_packed.h
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include/PacBio/seqan/basic/profiling.h
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include/PacBio/seqan/basic/property_map_concept.h
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include/PacBio/seqan/basic/proxy_base.h
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include/PacBio/seqan/basic/proxy_iterator.h
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include/PacBio/seqan/basic/test_system.h
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include/PacBio/seqan/basic/triple_base.h
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include/PacBio/seqan/basic/triple_packed.h
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include/PacBio/seqan/basic/tuple_base.h
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include/PacBio/seqan/basic/tuple_bit_compressed.h
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include/PacBio/seqan/basic/volatile_ptr.h
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include/PacBio/seqan/bed_io.h
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include/PacBio/seqan/bed_io/bed_file.h
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include/PacBio/seqan/bed_io/bed_record.h
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include/PacBio/seqan/bed_io/read_bed.h
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include/PacBio/seqan/bed_io/write_bed.h
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include/PacBio/seqan/consensus.h
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include/PacBio/seqan/consensus/consensus_aligner.h
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include/PacBio/seqan/consensus/consensus_aligner_interface.h
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include/PacBio/seqan/consensus/consensus_alignment_options.h
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include/PacBio/seqan/consensus/consensus_base.h
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include/PacBio/seqan/consensus/consensus_builder.h
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include/PacBio/seqan/consensus/consensus_library.h
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include/PacBio/seqan/consensus/consensus_realign.h
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include/PacBio/seqan/consensus/consensus_score.h
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include/PacBio/seqan/consensus/overlap_info_computation.h
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include/PacBio/seqan/consensus/overlapper.h
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include/PacBio/seqan/file.h
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include/PacBio/seqan/file/file_base.h
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include/PacBio/seqan/file/file_cstyle.h
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include/PacBio/seqan/file/file_forwards.h
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include/PacBio/seqan/file/file_interface.h
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include/PacBio/seqan/file/file_mapping.h
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include/PacBio/seqan/file/file_page.h
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include/PacBio/seqan/file/string_external.h
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include/PacBio/seqan/file/string_mmap.h
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include/PacBio/seqan/find.h
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include/PacBio/seqan/find/find_abndm.h
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include/PacBio/seqan/find/find_ahocorasick.h
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include/PacBio/seqan/find/find_base.h
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include/PacBio/seqan/find/find_begin.h
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include/PacBio/seqan/find/find_bndm.h
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include/PacBio/seqan/find/find_bom.h
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include/PacBio/seqan/find/find_hamming_simple.h
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include/PacBio/seqan/find/find_horspool.h
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include/PacBio/seqan/find/find_lambda.h
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include/PacBio/seqan/find/find_multi.h
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include/PacBio/seqan/find/find_multiple_bfam.h
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include/PacBio/seqan/find/find_multiple_shiftand.h
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include/PacBio/seqan/find/find_myers_ukkonen.h
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include/PacBio/seqan/find/find_pattern_base.h
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include/PacBio/seqan/find/find_pex.h
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include/PacBio/seqan/find/find_score.h
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include/PacBio/seqan/find/find_set_horspool.h
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include/PacBio/seqan/find/find_shiftand.h
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include/PacBio/seqan/find/find_shiftor.h
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include/PacBio/seqan/find/find_simple.h
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include/PacBio/seqan/find/find_wild_shiftand.h
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include/PacBio/seqan/find/find_wumanber.h
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include/PacBio/seqan/gff_io.h
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include/PacBio/seqan/gff_io/gff_file.h
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include/PacBio/seqan/gff_io/gff_io_base.h
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include/PacBio/seqan/graph_algorithms.h
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include/PacBio/seqan/graph_algorithms/all_pairs_shortest_path.h
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include/PacBio/seqan/graph_algorithms/bellman_ford.h
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include/PacBio/seqan/graph_algorithms/bipartite_matching.h
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include/PacBio/seqan/graph_algorithms/breadth_first_search.h
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include/PacBio/seqan/graph_algorithms/connected_components.h
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include/PacBio/seqan/graph_algorithms/depth_first_search.h
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include/PacBio/seqan/graph_algorithms/dijkstra.h
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include/PacBio/seqan/graph_algorithms/floyd_warshall.h
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include/PacBio/seqan/graph_algorithms/ford_fulkerson.h
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include/PacBio/seqan/graph_algorithms/graph_algorithm_heap_tree.h
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include/PacBio/seqan/graph_algorithms/graph_algorithm_hmm.h
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include/PacBio/seqan/graph_algorithms/graph_algorithm_lis_his.h
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include/PacBio/seqan/graph_algorithms/kruskal.h
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||||
include/PacBio/seqan/graph_algorithms/path_growing.h
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||||
include/PacBio/seqan/graph_algorithms/prim.h
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||||
include/PacBio/seqan/graph_algorithms/single_source_shortest_path.h
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||||
include/PacBio/seqan/graph_algorithms/strongly_connected_compnents.h
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||||
include/PacBio/seqan/graph_algorithms/topological_sort.h
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||||
include/PacBio/seqan/graph_algorithms/transitive_closure.h
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||||
include/PacBio/seqan/graph_algorithms/weakly_connected_components.h
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||||
include/PacBio/seqan/graph_algorithms/weighted_bipartite_matching.h
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||||
include/PacBio/seqan/graph_align.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_align.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_aligngraph.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_annotation.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_exact.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_fragment.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_inexact.h
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||||
include/PacBio/seqan/graph_align/graph_algorithm_refine_scoring.h
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||||
include/PacBio/seqan/graph_align/graph_impl_align.h
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||||
include/PacBio/seqan/graph_align/graph_impl_align_adapt.h
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||||
include/PacBio/seqan/graph_msa.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_base.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_distance.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_guidetree.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_io.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_kmer.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_library.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_msa.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_progressive.h
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||||
include/PacBio/seqan/graph_msa/graph_align_tcoffee_refinement.h
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||||
include/PacBio/seqan/graph_types.h
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||||
include/PacBio/seqan/graph_types/graph_base.h
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||||
include/PacBio/seqan/graph_types/graph_drawing.h
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include/PacBio/seqan/graph_types/graph_edgestump.h
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include/PacBio/seqan/graph_types/graph_idmanager.h
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include/PacBio/seqan/graph_types/graph_impl_automaton.h
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include/PacBio/seqan/graph_types/graph_impl_directed.h
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include/PacBio/seqan/graph_types/graph_impl_hmm.h
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include/PacBio/seqan/graph_types/graph_impl_oracle.h
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include/PacBio/seqan/graph_types/graph_impl_tree.h
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include/PacBio/seqan/graph_types/graph_impl_trie.h
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include/PacBio/seqan/graph_types/graph_impl_undirected.h
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include/PacBio/seqan/graph_types/graph_impl_wordgraph.h
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include/PacBio/seqan/graph_types/graph_interface.h
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include/PacBio/seqan/graph_types/graph_iterator.h
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include/PacBio/seqan/graph_types/graph_iterator_adjacency.h
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include/PacBio/seqan/graph_types/graph_iterator_bfs.h
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include/PacBio/seqan/graph_types/graph_iterator_dfs.h
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include/PacBio/seqan/graph_types/graph_iterator_edge.h
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include/PacBio/seqan/graph_types/graph_iterator_outedge.h
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include/PacBio/seqan/graph_types/graph_iterator_vertex.h
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include/PacBio/seqan/graph_types/graph_utility_parsing.h
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include/PacBio/seqan/graph_types/property_map_generic.h
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include/PacBio/seqan/graph_types/property_map_internal.h
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include/PacBio/seqan/index/find2_index_multi.h
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include/PacBio/seqan/index/find2_vstree_factory.h
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include/PacBio/seqan/index/find_pigeonhole.h
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include/PacBio/seqan/index/index_bwt.h
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include/PacBio/seqan/index/index_childtab.h
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include/PacBio/seqan/index/index_fm_sparse_string.h
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include/PacBio/seqan/index/index_lcp_tree.h
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include/PacBio/seqan/index/index_pizzachili_find.h
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include/PacBio/seqan/index/index_qgram_openaddressing.h
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include/PacBio/seqan/index/index_qgram_stree.h
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include/PacBio/seqan/index/index_sa_mm.h
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include/PacBio/seqan/index/index_sa_qsort.h
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include/PacBio/seqan/misc/name_store_cache.h
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include/PacBio/seqan/misc/priority_type_base.h
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include/PacBio/seqan/misc/priority_type_heap.h
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
include/PacBio/seqan/pipe/pipe_counter.h
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||||
include/PacBio/seqan/pipe/pipe_echoer.h
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||||
include/PacBio/seqan/pipe/pipe_edit_environment.h
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||||
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||||
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||||
include/PacBio/seqan/pipe/pipe_joiner.h
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||||
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||||
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||||
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||||
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||||
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||||
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||||
include/PacBio/seqan/pipe/pool_mapper.h
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||||
include/PacBio/seqan/pipe/pool_sorter.h
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||||
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||||
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||||
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||||
include/PacBio/seqan/platform/platform_mingw.h
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||||
include/PacBio/seqan/platform/platform_nvcc.h
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||||
include/PacBio/seqan/platform/platform_pgi.h
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||||
include/PacBio/seqan/platform/platform_solaris.h
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||||
include/PacBio/seqan/platform/platform_windows.h
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||||
include/PacBio/seqan/platform/windows_stdint.h
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||||
include/PacBio/seqan/random.h
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||||
include/PacBio/seqan/random/ext_MersenneTwister.h
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||||
include/PacBio/seqan/random/random_base.h
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||||
include/PacBio/seqan/random/random_beta.h
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||||
include/PacBio/seqan/random/random_beta_kfunc.h
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||||
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||||
include/PacBio/seqan/random/random_lognormal.h
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||||
include/PacBio/seqan/random/random_mt19937.h
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||||
include/PacBio/seqan/random/random_normal.h
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||||
include/PacBio/seqan/random/random_rng_functor.h
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||||
include/PacBio/seqan/random/random_shuffle.h
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||||
include/PacBio/seqan/random/random_uniform.h
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||||
include/PacBio/seqan/realign.h
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||||
include/PacBio/seqan/realign/realign_base.h
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||||
include/PacBio/seqan/realign/realign_helper_functions.h
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
include/PacBio/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
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||||
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||||
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||||
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||||
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||||
include/PacBio/seqan/roi_io/roi_io_context.h
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||||
include/PacBio/seqan/roi_io/roi_record.h
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||||
include/PacBio/seqan/roi_io/write_roi.h
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||||
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||||
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||||
include/PacBio/seqan/score/score_edit.h
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||||
include/PacBio/seqan/score/score_matrix.h
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||||
include/PacBio/seqan/score/score_matrix_data.h
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||||
include/PacBio/seqan/score/score_matrix_io.h
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||||
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||||
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||||
include/PacBio/seqan/seeds/banded_chain_alignment.h
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||||
include/PacBio/seqan/seeds/banded_chain_alignment_impl.h
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||||
include/PacBio/seqan/seeds/banded_chain_alignment_profile.h
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||||
include/PacBio/seqan/seeds/banded_chain_alignment_scout.h
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||||
include/PacBio/seqan/seeds/banded_chain_alignment_traceback.h
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||||
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||||
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||||
include/PacBio/seqan/seeds/seeds_combination.h
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||||
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||||
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||||
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||||
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||||
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||||
include/PacBio/seqan/seeds/seeds_seed_chained.h
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||||
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||||
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||||
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||||
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||||
include/PacBio/seqan/seeds/seeds_seed_set_unordered.h
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
include/PacBio/seqan/sequence/segment_base.h
|
||||
include/PacBio/seqan/sequence/segment_infix.h
|
||||
include/PacBio/seqan/sequence/segment_prefix.h
|
||||
include/PacBio/seqan/sequence/segment_suffix.h
|
||||
include/PacBio/seqan/sequence/segment_utils.h
|
||||
include/PacBio/seqan/sequence/sequence_concatenator.h
|
||||
include/PacBio/seqan/sequence/sequence_forwards.h
|
||||
include/PacBio/seqan/sequence/sequence_interface.h
|
||||
include/PacBio/seqan/sequence/sequence_lexical.h
|
||||
include/PacBio/seqan/sequence/sequence_shortcuts.h
|
||||
include/PacBio/seqan/sequence/string_alloc.h
|
||||
include/PacBio/seqan/sequence/string_array.h
|
||||
include/PacBio/seqan/sequence/string_base.h
|
||||
include/PacBio/seqan/sequence/string_block.h
|
||||
include/PacBio/seqan/sequence/string_cstyle.h
|
||||
include/PacBio/seqan/sequence/string_packed.h
|
||||
include/PacBio/seqan/sequence/string_packed_old.h
|
||||
include/PacBio/seqan/sequence/string_set_base.h
|
||||
include/PacBio/seqan/sequence/string_set_concat_direct.h
|
||||
include/PacBio/seqan/sequence/string_set_dependent_generous.h
|
||||
include/PacBio/seqan/sequence/string_set_dependent_tight.h
|
||||
include/PacBio/seqan/sequence/string_set_device.h
|
||||
include/PacBio/seqan/sequence/string_set_owner.h
|
||||
include/PacBio/seqan/sequence/string_set_segment.h
|
||||
include/PacBio/seqan/sequence/string_set_view.h
|
||||
include/PacBio/seqan/sequence_journaled.h
|
||||
include/PacBio/seqan/sequence_journaled/journal_entries_sorted_array.h
|
||||
include/PacBio/seqan/sequence_journaled/journal_entry.h
|
||||
include/PacBio/seqan/sequence_journaled/sequence_journaled.h
|
||||
include/PacBio/seqan/sequence_journaled/sequence_journaled_iterator.h
|
||||
include/PacBio/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
|
||||
include/PacBio/seqan/simple_intervals_io.h
|
||||
include/PacBio/seqan/simple_intervals_io/simple_intervals_file.h
|
||||
include/PacBio/seqan/simple_intervals_io/simple_intervals_io.h
|
||||
include/PacBio/seqan/statistics.h
|
||||
include/PacBio/seqan/statistics/statistics_base.h
|
||||
include/PacBio/seqan/statistics/statistics_markov_model.h
|
||||
include/PacBio/seqan/store.h
|
||||
include/PacBio/seqan/store/store_align.h
|
||||
include/PacBio/seqan/store/store_align_intervals.h
|
||||
include/PacBio/seqan/store/store_all.h
|
||||
include/PacBio/seqan/store/store_annotation.h
|
||||
include/PacBio/seqan/store/store_base.h
|
||||
include/PacBio/seqan/store/store_contig.h
|
||||
include/PacBio/seqan/store/store_intervaltree.h
|
||||
include/PacBio/seqan/store/store_io.h
|
||||
include/PacBio/seqan/store/store_io_gff.h
|
||||
include/PacBio/seqan/store/store_io_sam.h
|
||||
include/PacBio/seqan/store/store_io_ucsc.h
|
||||
include/PacBio/seqan/store/store_library.h
|
||||
include/PacBio/seqan/store/store_matepair.h
|
||||
include/PacBio/seqan/store/store_read.h
|
||||
include/PacBio/seqan/stream.h
|
||||
include/PacBio/seqan/stream/adapt_ios.h
|
||||
include/PacBio/seqan/stream/buffered_stream.h
|
||||
include/PacBio/seqan/stream/file_stream.h
|
||||
include/PacBio/seqan/stream/formatted_file.h
|
||||
include/PacBio/seqan/stream/guess_format.h
|
||||
include/PacBio/seqan/stream/iostream_bgzf.h
|
||||
include/PacBio/seqan/stream/iostream_bgzf_impl.h
|
||||
include/PacBio/seqan/stream/iostream_bzip2.h
|
||||
include/PacBio/seqan/stream/iostream_bzip2_impl.h
|
||||
include/PacBio/seqan/stream/iostream_zip.h
|
||||
include/PacBio/seqan/stream/iostream_zip_impl.h
|
||||
include/PacBio/seqan/stream/iostream_zutil.h
|
||||
include/PacBio/seqan/stream/iter_stream.h
|
||||
include/PacBio/seqan/stream/lexical_cast.h
|
||||
include/PacBio/seqan/stream/stream_base.h
|
||||
include/PacBio/seqan/stream/stream_compressor.h
|
||||
include/PacBio/seqan/stream/tokenization.h
|
||||
include/PacBio/seqan/stream/virtual_stream.h
|
||||
include/PacBio/seqan/system.h
|
||||
include/PacBio/seqan/system/file_async.h
|
||||
include/PacBio/seqan/system/file_directory.h
|
||||
include/PacBio/seqan/system/file_forwards.h
|
||||
include/PacBio/seqan/system/file_sync.h
|
||||
include/PacBio/seqan/system/system_base.h
|
||||
include/PacBio/seqan/system/system_condition.h
|
||||
include/PacBio/seqan/system/system_critical_section.h
|
||||
include/PacBio/seqan/system/system_event.h
|
||||
include/PacBio/seqan/system/system_forwards.h
|
||||
include/PacBio/seqan/system/system_mutex.h
|
||||
include/PacBio/seqan/system/system_thread.h
|
||||
include/PacBio/seqan/translation.h
|
||||
include/PacBio/seqan/translation/translation.h
|
||||
include/PacBio/seqan/translation/translation_tables.h
|
||||
include/PacBio/seqan/ucsc_io.h
|
||||
include/PacBio/seqan/ucsc_io/ucsc_file.h
|
||||
include/PacBio/seqan/ucsc_io/ucsc_io.h
|
||||
include/PacBio/seqan/ucsc_io/ucsc_record.h
|
||||
include/PacBio/seqan/vcf_io.h
|
||||
include/PacBio/seqan/vcf_io/read_vcf.h
|
||||
include/PacBio/seqan/vcf_io/vcf_file.h
|
||||
include/PacBio/seqan/vcf_io/vcf_header.h
|
||||
include/PacBio/seqan/vcf_io/vcf_header_record.h
|
||||
include/PacBio/seqan/vcf_io/vcf_io_context.h
|
||||
include/PacBio/seqan/vcf_io/vcf_record.h
|
||||
include/PacBio/seqan/vcf_io/write_vcf.h
|
||||
include/PacBio/seqan/version.h
|
||||
Loading…
Reference in New Issue
Block a user