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Code Issues Releases Activity

Update to 1.00.a1; change MAINTAINER to my new address.

Browse Source 
Many changes to port, including addition of CORBA functionality.

PR:		27957
Submitted by:	Johann Visagie <johann@egenetics.com>
Reviewed by:	nbm
This commit is contained in:
Johann Visagie 2001-06-15 13:25:56 +00:00
parent 8b8f3b479d
commit 23164d0987
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=44034
6 changed files with 702 additions and 135 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

116
biology/py-biopython/Makefile
View File

@ -6,23 +6,121 @@
#
PORTNAME= biopython
PORTVERSION= 0.90.d03
PORTVERSION= 1.00.a1
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/Download/
PKGNAMEPREFIX= py-
DISTNAME= biopython-0.90-d03
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.a/a/}
DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
MAINTAINER= johann@egenetics.com
MAINTAINER= wjv@FreeBSD.org
USE_PYTHON= yes
BUILD_DEPENDS= ${PYDISTUTILS} \
BUILD_DEPENDS= ${PYDISTUTILS}
RUN_DEPENDS= ${PYTHON_SITELIBDIR}/Martel/__init__.py:${PORTSDIR}/textproc/py-martel \
${PYTHON_SITELIBDIR}/Numeric/Numeric.py:${PORTSDIR}/math/py-numeric
# Biopython requires Python 2.0 or above:
PYTHON_VERSION= python2.1
PLIST_SUB+= PLIST_CORBA=${PLIST_CORBA} PLIST_OMNIORB=${PLIST_OMNIORB} \
PLIST_FNORB=${PLIST_FNORB}
CPIO= cpio --quiet -pdum -R
DOCDIR= ${PREFIX}/share/doc/py-biopython
EGDIR= ${PREFIX}/share/examples/py-biopython
# CORBA support (a.k.a Biopython-CORBA):
# Set WITH_CORBA to enable CORBA support for the Biopython port.
.if defined(WITH_CORBA)
# CORBA_ORB may be set from the command line to either "omniorb", "fnorb"
# or "orbit".
# - omniORB is a commercial quality, high speed ORB. The installation is
# huge and building the C++ source is a lengthy process. The omniORBpy
# Python bindings are used.
# - Fnorb is a tiny, lightweight ORB and is excellent for testing purposes.
# - ORBit is a very popular and elegant ORB. The ORBit-Python bindings are
# used.
# Since Fnorb is distributed under a non-free licence and ORBit support in
# Biopython-CORBA is not yet stable, "omniorb" is the default.
CORBA_ORB?= omniorb
CORBA_VERSION= 0.2.1
CORBA_DISTNAME= biopython-corba-${CORBA_VERSION}
CORBA_WRKSRC= ${WRKDIR}/${CORBA_DISTNAME}
DISTFILES+= ${CORBA_DISTNAME}${EXTRACT_SUFX}
PLIST_CORBA= ""
.if ${CORBA_ORB} == "omniorb"
RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/omniORB/__init__.py:${PORTSDIR}/devel/py-omniorb
CORBA_ORBNAME= omniORB
PLIST_OMNIORB= ""
PLIST_FNORB= "@comment "
.elif ${CORBA_ORB} == "fnorb"
BUILD_DEPENDS+= ${PYTHON_SITELIBDIR}/Fnorb/__init__.py:${PORTSDIR}/devel/fnorb
CORBA_ORBNAME= Fnorb
EXTRA_PATCHES+= ${PATCHDIR}/extra-patch-build_helper.py
PLIST_OMNIORB= "@comment "
PLIST_FNORB= ""
.elif ${CORBA_ORB} == "orbit"
RUN_DEPENDS+= ${PREFIX}/include/orbit-python/orbit-python.h:${PORTSDIR}/devel/py-orbit
CORBA_ORBNAME= ORBit
PLIST_OMNIORB= "@comment "
PLIST_FNORB= "@comment "
.endif
.else
PLIST_CORBA= "@comment "
PLIST_OMNIORB= "@comment "
PLIST_FNORB= "@comment "
.endif # defined(WITH_CORBA)
pre-fetch:
.if !defined(BATCH) && !defined(WITH_CORBA)
@ ${CAT} files/corba.msg
.endif
post-configure:
.if defined(WITH_CORBA)
@ ${PERL} -pi.orig -e \
"/^orb_implementation/ && s/omniORB/${CORBA_ORBNAME}/" \
${CORBA_WRKSRC}/BioCorba/biocorbaconfig.py
.endif
do-build:
@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build)
@ cd ${WRKSRC} && ${PYTHON_CMD} setup.py build
.if defined(WITH_CORBA)
@ cd ${CORBA_WRKSRC} && ${PYTHON_CMD} setup.py build
.endif
do-install:
@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py install)
@ cd ${WRKSRC} && ${PYTHON_CMD} setup.py install -c -O1 \
--prefix=${PREFIX}
.if defined(WITH_CORBA)
@ cd ${CORBA_WRKSRC} && ${PYTHON_CMD} setup.py install -c -O1 \
--prefix=${PREFIX}
.endif
post-install:
.if !defined(NOPORTDOCS)
@ ${MKDIR} ${DOCDIR}
.for docfiles in *.txt *.tex *.py
@ ${INSTALL_DATA} ${WRKSRC}/Doc/${docfiles} ${DOCDIR}
.endfor
@ ${MKDIR} ${EGDIR}
@ ${INSTALL_DATA} ${WRKSRC}/Doc/examples/*.py ${EGDIR}
@ cd ${WRKSRC} && find Scripts \
| ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EGDIR}
.if defined(WITH_CORBA)
@ ${MKDIR} ${DOCDIR}/BioCorba
.for docfiles in *.tex *.pdf
@ ${INSTALL_DATA} ${CORBA_WRKSRC}/Doc/${docfiles} ${DOCDIR}/BioCorba
.endfor
@ ${MKDIR} ${EGDIR}/BioCorba
@ cd ${CORBA_WRKSRC}/Doc/examples && find * \
| ${CPIO} ${SHAREOWN}:${SHAREGRP} ${EGDIR}/BioCorba
@ ${MKDIR} ${EGDIR}/BioCorba/Scripts
@ ${INSTALL_DATA} ${CORBA_WRKSRC}/Scripts/* ${EGDIR}/BioCorba/Scripts
.endif # defined(WITH_CORBA)
.endif # !defined(NOPORTDOCS)
.include <bsd.port.mk>

3
biology/py-biopython/distinfo
View File

@ -1 +1,2 @@
MD5 (biopython-0.90-d03.tar.gz) = 6eba4ef18fee09f47c127d44667a3d5c
MD5 (biopython-1.00a1.tar.gz) = 054baa272e2885e17512964215817119
MD5 (biopython-corba-0.2.1.tar.gz) = 3d6d3e4570ff2996bef84e08f6fabc25

12
biology/py-biopython/files/corba.msg Normal file
View File

@ -0,0 +1,12 @@
---------------------------------------------------------------------------
Biopython is currently being built without CORBA support. If you wish to
enable the optional CORBA support, set the WITH_CORBA variable, e.g.:
make WITH_CORBA=yes install
If you set WITH_CORBA, you may optionally also set the CORBA_ORB variable
to "omniorb", "fnorb" or "orbit". If you do not, "omniorb" is assumed as
default.
Further details are provided in the comments in this port's Makefile.
---------------------------------------------------------------------------

24
biology/py-biopython/files/extra-patch-build_helper.py Normal file
View File

@ -0,0 +1,24 @@
Nasty, nasty workaround for an error which I can't quite explain. This
happens only if Fnorb is chosen as CORBA ORB. Since CORBA support itself
is optional in this port, this patch is added to EXTRA_PATCHES only if
necessary.
-- Johann Visagie <johann@egenetics.com>
--- ../biopython-corba-0.2.1/build_helper.py.orig Sun Apr 15 15:19:31 2001
+++ ../biopython-corba-0.2.1/build_helper.py Thu Jun 7 16:25:05 2001
@@ -125,7 +125,12 @@
# move the new file in place of the old
input_handle.close()
output_handle.close()
- os.rename(output_file, file)
+ input_handle = open(output_file, 'r')
+ output_handle = open(file, 'w')
+ S = input_handle.read()
+ output_handle.write(S)
+ input_handle.close()
+ output_handle.close()
def generate_orbit_stubs(idl_name, remove_old = 1):
"""Move adapters to act as stubs and skeletons for ORBit.

15
biology/py-biopython/pkg-descr
View File

@ -1,12 +1,15 @@
The Biopython Project is an international association of developers of freely
available Python tools for use in areas of computational molecular biology
such as bioinformatics and genomics.
The Biopython Project is an international association of developers who are
providing freely available Python tools for use in areas of computational
molecular biology such as bioinformatics and genomics.
Biopython is a collection of Python packages and modules created by the
Biopython Project, intended to provide the basis for building bioinformatics
applications in the Python language. It is currently in developer's
(pre-alpha) release. Caveat emptor.
applications in the Python language.
WWW: http://www.biopython.org/
Note that the current release is alpha quality, and not yet deemed to be
stable.
Authors: <biopython-dev@biopython.org>
WWW: http://biopython.org/
-- Johann Visagie <johann@egenetics.com>

667
biology/py-biopython/pkg-plist
View File

@ -1,143 +1,572 @@
lib/%%PYTHON_VERSION%%/site-packages/Bio/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/ParserSupport.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Seq.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/PropertyManager.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/File.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Sequence.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/KeyWList.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/SProt.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIWWW.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Record.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/Enzyme.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/Fasta.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/Prosite.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/Pattern.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/Prodoc.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/Medline.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/IUPACData.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/CodonTable.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Entrez/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/mathfns.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Transcribe.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/listfns.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/stringfns.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Translate.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/NaiveBayes.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/SVM.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/kNN.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/__init__.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/SCOP.py
lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/Generic.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/Generic.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/Generic.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_EnsemblPOA.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_EnsemblPOA.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_EnsemblPOA.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_GnomePOA.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_GnomePOA.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_GnomePOA.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_SeqcorePOA.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_SeqcorePOA.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/fnorb_SeqcorePOA.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Ensembl.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Ensembl.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Ensembl.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_EnsemblPOA.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_EnsemblPOA.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_EnsemblPOA.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Gnome.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Gnome.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Gnome.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_GnomePOA.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_GnomePOA.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_GnomePOA.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Seqcore.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Seqcore.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_Seqcore.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_SeqcorePOA.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_SeqcorePOA.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Adapters/orbit_SeqcorePOA.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Fasta/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/GenBank/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Seq.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Seq.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/Seq.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqFeature.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqFeature.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqFeature.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqRecord.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqRecord.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/SeqRecord.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Bio/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/BiocorbaConnect.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/BiocorbaConnect.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/BiocorbaConnect.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Exon.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Exon.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Exon.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Gene.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Gene.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Gene.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Transcript.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Transcript.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Transcript.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Translation.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Translation.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/Translation.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/VirtualContig.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/VirtualContig.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/VirtualContig.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Ensembl/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/CorbaUnknown.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/CorbaUnknown.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/CorbaUnknown.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/GnomeMemory/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaAnonymousSeq.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaAnonymousSeq.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaAnonymousSeq.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaBioEnv.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaBioEnv.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaBioEnv.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaExceptions.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaExceptions.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaExceptions.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaPrimarySeq.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaPrimarySeq.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaPrimarySeq.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeq.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeq.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeq.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeqFeature.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeqFeature.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaSeqFeature.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaUpdatableSeqDB.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaUpdatableSeqDB.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/CorbaUpdatableSeqDB.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/Seqcore/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/__init__.py
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/__init__.pyc
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/Client/__init__.pyo
%%PLIST_CORBA%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/GNOME/__init__.py
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