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math/jags: 3.4.0 -> 4.0.0
- New WWW - Changes: https://martynplummer.wordpress.com/2015/08/02/whats-new-in-jags-4-0-0-part-14-reproducibility-and-testing/ https://martynplummer.wordpress.com/2015/08/09/whats-new-in-jags-4-0-0-part-24-dealing-with-undefined-nodes/ https://martynplummer.wordpress.com/2015/08/16/whats-new-in-jags-4-0-0-part-34-r-style-features/#more-353 PR: 204525 Submitted by: Rainer Hurling <rhurlin@gwdg.de> Approved by: bf
This commit is contained in:
Kurt Jaeger
parent
6f5df18c0f
commit
2487f5dd9f
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=405180
@ -2,14 +2,14 @@
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# $FreeBSD$
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PORTNAME= mcmc-jags
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PORTVERSION= 3.4.0
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PORTREVISION= 4
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PORTVERSION= 4.0.0
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CATEGORIES= math
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MASTER_SITES= SF/mcmc-jags/JAGS/${S}.x/Source/:1 \
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SF/mcmc-jags/Examples/${S}.x/:2 \
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SF/mcmc-jags/Manuals/2.x/:3 \
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SF/mcmc-jags/Manuals/${S}.x/:4
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DISTFILES= JAGS-${PORTVERSION}${EXTRACT_SUFX}:1
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DIST_SUBDIR= ${PORTNAME}
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EXTRACT_ONLY= ${DISTFILES:M*[12]:C|:.*||}
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MAINTAINER= bf@FreeBSD.org
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@ -18,14 +18,12 @@ COMMENT= Just Another Gibbs Sampler
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LICENSE= GPLv2
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GNU_CONFIGURE= yes
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USES= bison fortran gmake libtool
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USES= bison compiler:features fortran gmake libtool localbase
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USE_GCC= yes
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USE_LDCONFIG= yes
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DIST_SUBDIR= ${PORTNAME}
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WRKSRC= ${WRKDIR}/JAGS-${PORTVERSION}
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CPPFLAGS+= -I${LOCALBASE}/include
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LDFLAGS+= -L${LOCALBASE}/lib
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PLIST_SUB= MODULEVERSION=${S}
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S= ${PORTVERSION:C|\..*||}
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@ -57,7 +55,7 @@ LIB_DEPENDS+= libblas.so:${PORTSDIR}/math/blas
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LIB_DEPENDS+= liblapack.so:${PORTSDIR}/math/lapack
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CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas"
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.else
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IGNORE= : invalid value for WITH_BLAS: ${WITH_BLAS}
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IGNORE= invalid value for WITH_BLAS: ${WITH_BLAS}
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.endif
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post-patch:
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@ -1,10 +1,10 @@
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SHA256 (mcmc-jags/JAGS-3.4.0.tar.gz) = 2beaa9a2672c2c95efc55ffa4c8b597a872f20232373daebd17ad539d3d7d82b
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SIZE (mcmc-jags/JAGS-3.4.0.tar.gz) = 1677450
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SHA256 (mcmc-jags/JAGS-4.0.0.tar.gz) = a1d572269029d90d4e8b25757fd7ae9678994bd682937ec505ddcf06185d2c4c
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SIZE (mcmc-jags/JAGS-4.0.0.tar.gz) = 1880476
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SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b
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SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319
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SHA256 (mcmc-jags/jags_installation_manual.pdf) = 4b339af679186783f1bcfc1c31483238cbd46eb9f1f31eb853da51dae61cb3e5
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SIZE (mcmc-jags/jags_installation_manual.pdf) = 167002
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SHA256 (mcmc-jags/jags_user_manual.pdf) = febaf9b22cee57c2fc688a16969d3ddeaa83c1dee7915b872a6cf6772b1f9958
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SIZE (mcmc-jags/jags_user_manual.pdf) = 325886
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SHA256 (mcmc-jags/classic-bugs.tar.gz) = eee97e64f06189a13f6fdee738ea65db088eafa63a5eddedeef66c685f920bae
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SIZE (mcmc-jags/classic-bugs.tar.gz) = 83112
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SHA256 (mcmc-jags/jags_installation_manual.pdf) = 022fcedcf85b259cfe52b13b8a1c3b02a4f0af3ab8370a160c9d5bc739699848
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SIZE (mcmc-jags/jags_installation_manual.pdf) = 208573
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SHA256 (mcmc-jags/jags_user_manual.pdf) = d4151d383868b700531fc54b1b4849085cb313e4e360d72acf031675331383bb
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SIZE (mcmc-jags/jags_user_manual.pdf) = 349318
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SHA256 (mcmc-jags/classic-bugs.tar.gz) = 6428cc0a971010633a349addafcb1c87621557c9497e9fd29cb94bd4e6e04d52
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SIZE (mcmc-jags/classic-bugs.tar.gz) = 83784
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@ -1,9 +1,7 @@
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bin/mcmc-jags
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include/JAGS/Console.h
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include/JAGS/JRmath.h
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include/JAGS/Module.h
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include/JAGS/compiler/Compiler.h
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include/JAGS/compiler/ConstantFactory.h
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include/JAGS/compiler/Counter.h
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include/JAGS/compiler/CounterTab.h
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include/JAGS/compiler/LogicalFactory.h
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@ -16,16 +14,25 @@ include/JAGS/distribution/DistError.h
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include/JAGS/distribution/DistPtr.h
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include/JAGS/distribution/DistTab.h
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include/JAGS/distribution/Distribution.h
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include/JAGS/distribution/RScalarDist.h
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include/JAGS/distribution/ScalarDist.h
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include/JAGS/distribution/VectorDist.h
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include/JAGS/function/ArrayFunction.h
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include/JAGS/function/ArrayLogDensity.h
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include/JAGS/function/DFunction.h
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include/JAGS/function/DPQFunction.h
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include/JAGS/function/FuncError.h
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include/JAGS/function/FuncTab.h
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include/JAGS/function/Function.h
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include/JAGS/function/FunctionPtr.h
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include/JAGS/function/LinkFunction.h
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include/JAGS/function/PFunction.h
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include/JAGS/function/QFunction.h
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include/JAGS/function/ScalarFunction.h
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include/JAGS/function/ScalarLogDensity.h
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include/JAGS/function/ScalarVectorFunction.h
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include/JAGS/function/VectorFunction.h
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include/JAGS/function/VectorLogDensity.h
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include/JAGS/graph/AggNode.h
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include/JAGS/graph/ArrayLogicalNode.h
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include/JAGS/graph/ArrayStochasticNode.h
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@ -35,9 +42,11 @@ include/JAGS/graph/Graph.h
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include/JAGS/graph/GraphMarks.h
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include/JAGS/graph/LinkNode.h
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include/JAGS/graph/LogicalNode.h
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include/JAGS/graph/MixTab.h
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include/JAGS/graph/MixtureNode.h
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include/JAGS/graph/Node.h
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include/JAGS/graph/NodeError.h
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include/JAGS/graph/ParentError.h
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include/JAGS/graph/ScalarLogicalNode.h
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include/JAGS/graph/ScalarStochasticNode.h
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include/JAGS/graph/StochasticNode.h
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@ -51,27 +60,34 @@ include/JAGS/model/MonitorControl.h
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include/JAGS/model/MonitorFactory.h
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include/JAGS/model/MonitorInfo.h
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include/JAGS/model/NodeArray.h
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include/JAGS/model/NodeArraySubset.h
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include/JAGS/model/SymTab.h
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include/JAGS/module/Module.h
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include/JAGS/module/ModuleError.h
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include/JAGS/rng/RNG.h
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include/JAGS/rng/RmathRNG.h
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include/JAGS/rng/RNGFactory.h
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include/JAGS/rng/RmathRNG.h
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include/JAGS/rng/TruncatedNormal.h
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include/JAGS/sampler/GraphView.h
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include/JAGS/sampler/ImmutableSampleMethod.h
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include/JAGS/sampler/ImmutableSampler.h
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include/JAGS/sampler/Linear.h
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include/JAGS/sampler/Metropolis.h
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include/JAGS/sampler/ParallelSampler.h
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include/JAGS/sampler/MutableSampleMethod.h
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include/JAGS/sampler/MutableSampler.h
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include/JAGS/sampler/RWMetropolis.h
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include/JAGS/sampler/SampleMethod.h
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include/JAGS/sampler/SampleMethodNoAdapt.h
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include/JAGS/sampler/Sampler.h
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include/JAGS/sampler/SamplerFactory.h
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include/JAGS/sampler/SingletonFactory.h
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include/JAGS/sampler/SingletonGraphView.h
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include/JAGS/sampler/Slicer.h
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include/JAGS/sampler/StepAdapter.h
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include/JAGS/sampler/TemperedMetropolis.h
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include/JAGS/sarray/Range.h
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include/JAGS/sarray/RangeIterator.h
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include/JAGS/sarray/SArray.h
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include/JAGS/sarray/SimpleRange.h
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include/JAGS/util/dim.h
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include/JAGS/util/integer.h
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include/JAGS/util/logical.h
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@ -85,8 +101,8 @@ lib/JAGS/modules-%%MODULEVERSION%%/lecuyer.so
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lib/JAGS/modules-%%MODULEVERSION%%/mix.so
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lib/JAGS/modules-%%MODULEVERSION%%/msm.so
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lib/libjags.so
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lib/libjags.so.3
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lib/libjags.so.3.0.4
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lib/libjags.so.4
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lib/libjags.so.4.0.0
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lib/libjrmath.so
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lib/libjrmath.so.0
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lib/libjrmath.so.0.0.0
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