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biology/py-dna-features-viewer: Python lib to visualize DNA features

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DNA Features Viewer is a Python library to visualize DNA features, e.g.
from GenBank or Gff files.

DNA Features Viewer can plot sequence maps linearly or circularly, with
or without nucleotide sequence and amino-acid sequences. The plotter
automatically produces clear plots even for sequences with many
overlapping features and long labels. The library plays well with
Matplotlib and Biopython, and the figures can be saved in different
formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS
interfaces.
This commit is contained in:
Jason W. Bacon 2022-02-03 06:37:38 -06:00
parent 714d30ce9a
commit 2b1ef5b34e
3 changed files with 35 additions and 0 deletions
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biology/py-dna-features-viewer/Makefile Normal file
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PORTNAME= dna-features-viewer
DISTVERSION= 3.1.0
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= dna_features_viewer-${PORTVERSION}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Python library to visualize DNA features, e.g. GenBank or Gff files
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENCE.txt
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}matplotlib>=3:math/py-matplotlib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}biopython>0:biology/py-biopython@${PY_FLAVOR}
USES= python
USE_PYTHON= autoplist distutils
.include <bsd.port.mk>

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biology/py-dna-features-viewer/distinfo Normal file
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TIMESTAMP = 1643841661
SHA256 (dna_features_viewer-3.1.0.tar.gz) = 1430bbd861b4fa4a1855fb9554577bc1b2e969a6d1921882bb2de56902cd63ca
SIZE (dna_features_viewer-3.1.0.tar.gz) = 34795

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biology/py-dna-features-viewer/pkg-descr Normal file
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DNA Features Viewer is a Python library to visualize DNA features, e.g.
from GenBank or Gff files.
DNA Features Viewer can plot sequence maps linearly or circularly, with
or without nucleotide sequence and amino-acid sequences. The plotter
automatically produces clear plots even for sequences with many
overlapping features and long labels. The library plays well with
Matplotlib and Biopython, and the figures can be saved in different
formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS
interfaces.
WWW: https://pypi.python.org/project/dna-features-viewer/