mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-11-23 00:43:28 +00:00
Code Issues Releases Activity

- Update to version 6.1.01

Browse Source 
- Add MAKE_JOBS_SAFE
- Convert to optionsng
- Trim Makefile header

PR:           ports/171971
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
This commit is contained in:
Armin Pirkovitsch 2012-12-01 00:00:43 +00:00
parent 9c5386b239
commit 2b222ce70c
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=308054
15 changed files with 791 additions and 756 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

86
biology/tinker/Makefile
View File

@ -1,76 +1,74 @@
# New ports collection makefile for: tinker
# Date Created: 26 August 1998
# Whom: Glenn Johnson
#
# Created by: Glenn Johnson
# $FreeBSD$
#
PORTNAME= tinker
PORTVERSION= 5.1.09
PORTVERSION= 6.1.01
CATEGORIES= biology
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
MAINTAINER= ports@FreeBSD.org
COMMENT= A general purpose molecular modelling package
MAKE_ENV+= HAVE_G2C=yes INSTALL_PROGRAM="${INSTALL_PROGRAM}"
WRKSRC= ${WRKDIR}/tinker/source
MAKEFILE= ${WRKDIR}/tinker/make/Makefile
ALL_TARGET= all listing
INSTALL_TARGET= rename
RESTRICTED= author requests no distribution except from his FTP site
DOCS= 0README *.pdf *.txt announce/release*
SAMPLES= 0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.run *.xyz
OPTIONS_DEFINE= OPTIMIZED_FFLAGS DATA DOCS EXAMPLES
OPTIONS_DEFAULT=DATA
OPTIMIZED_FFLAGS_DESC= compilation optimizations
WRKSRC= ${WRKDIR}/${PORTNAME}
BUILD_WRKSRC= ${WRKSRC}/source
INSTALL_WRKSRC= ${WRKSRC}/source
USE_FORTRAN= yes
MAKE_ENV= HAVE_G2C=yes
MAKEFILE= ${WRKSRC}/make/Makefile
ALL_TARGET= all listing
INSTALL_TARGET= rename
MAKE_JOBS_SAFE= yes
SUB_FILES= pkg-message
DOCS= 0README *.pdf *.txt
SAMPLES= 0README *.make *.dyn *.int *.frac *.key *.seq *.pdb *.xyz
BENCHES= 0README *.dyn0 *.log *.key *.run *.xyz results*
.include <bsd.port.pre.mk>
USE_FORTRAN= yes
.if defined(WITH_OPTIMIZED_FLAGS)
.if ${PORT_OPTIONS:MOPTIMIZED_FFLAGS}
FFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations
.if (${ARCH} == "i386")
FFLAGS+= -mfancy-math-387 -malign-double
.endif # i386
.endif
pre-everything::
.if !defined(WITH_OPTIMIZED_FLAGS)
@${ECHO_MSG} "You can optimize by setting WITH_OPTIMIZED_FLAGS=yes."
.if empty(PORT_OPTIONS:MDATA)
NOPORTDATA= yes
.endif
post-extract:
${CHMOD} -R u+w ${WRKDIR}/tinker
post-patch:
@${REINPLACE_CMD} -e 's|%%FFLAGS%%|${FFLAGS}|g' ${WRKSRC}/../make/Makefile
@${CHMOD} -R u+w ${WRKSRC}
post-install:
@${MKDIR} ${DATADIR}
${INSTALL_DATA} ${INSTALL_WRKSRC}/tinker.txt ${DATADIR}
@${MKDIR} ${DATADIR}/params
@${INSTALL_DATA} ${WRKDIR}/tinker/source/tinker.txt \
${DATADIR}
@${INSTALL_DATA} ${WRKDIR}/tinker/params/* \
${DATADIR}/params
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
@${MKDIR} ${EXAMPLESDIR}
${INSTALL_DATA} ${WRKSRC}/params/* ${DATADIR}/params
.if ${PORT_OPTIONS:MDATA}
@${MKDIR} ${DATADIR}/bench
${INSTALL_DATA} ${BENCHES:S|^|${WRKSRC}/bench/|} ${DATADIR}/bench
@${MKDIR} ${DATADIR}/test
@${INSTALL_DATA} ${DOCS:S|^|${WRKDIR}/tinker/doc/|} ${DOCSDIR}
@${INSTALL_DATA} ${SAMPLES:S|^|${WRKDIR}/tinker/example/|} ${EXAMPLESDIR}
@${INSTALL_DATA} ${BENCHES:S|^|${WRKDIR}/tinker/bench/|} ${DATADIR}/bench
@${INSTALL_DATA} ${WRKDIR}/tinker/test/* ${DATADIR}/test
${INSTALL_DATA} ${WRKSRC}/test/* ${DATADIR}/test
.endif
@${ECHO_MSG} ""
@${ECHO_MSG} " **********************************************************"
@${ECHO_MSG} " The author requests that you return a license form "
@${ECHO_MSG} " to him if you find Tinker to be useful. "
@${ECHO_MSG} " "
@${ECHO_MSG} " See ${DOCSDIR} for license forms. "
@${ECHO_MSG} " **********************************************************"
@${ECHO_MSG} ""
.if ${PORT_OPTIONS:MDOCS}
@${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${DOCS:S|^|${WRKSRC}/doc/|} ${DOCSDIR}
.endif
.if ${PORT_OPTIONS:MEXAMPLES}
@${MKDIR} ${EXAMPLESDIR}
${INSTALL_DATA} ${SAMPLES:S|^|${WRKSRC}/example/|} ${EXAMPLESDIR}
.endif
@${ECHO_CMD}
@${CAT} ${PKGMESSAGE}
@${ECHO_CMD}
.include <bsd.port.post.mk>

4
biology/tinker/distinfo
View File

@ -1,2 +1,2 @@
SHA256 (tinker-5.1.09.tar.gz) = 61765adfe260e3f3083243542dac49d38141191d5d6580e9a66a29c31d5a3183
SIZE (tinker-5.1.09.tar.gz) = 14071638
SHA256 (tinker-6.1.01.tar.gz) = fa287c381fd866822b19396fa152406b8463421f0a27902867cdbbf6b67233e4
SIZE (tinker-6.1.01.tar.gz) = 19478639

207
biology/tinker/files/patch-aa
View File

@ -1,207 +0,0 @@
--- ../make/Makefile.orig 2010-08-25 00:58:16.000000000 +0400
+++ ../make/Makefile 2011-01-22 01:12:41.000000000 +0300
@@ -9,8 +9,8 @@
##
## 1. make all Build all the TINKER executables
## 2. make rename Move the executables to BINDIR
-## 3. make remove_links Create soft links in LINKDIR
-## 4. make create_links Remove soft links from LINKDIR
+## 3. make remove_links Remove soft links in LINKDIR
+## 4. make create_links Create soft links from LINKDIR
## 6. make listing Concatenate source to tinker.txt
## 5. make clean Delete objects and executables
##
@@ -30,9 +30,9 @@
## LINKDIR Linked Copies of TINKER Executables
##
-TINKERDIR = /Users/ponder/tinker
-BINDIR = $(TINKERDIR)/bin
-LINKDIR = /usr/local/bin
+TINKERDIR = ${WRKDIR}
+BINDIR = ${PREFIX}/bin
+#LINKDIR = /usr/local/bin
####################################################################
## Known Machine Types; Uncomment One of the Following Sections ##
@@ -40,6 +40,20 @@
####################################################################
##
+## Machine: IntelPC / FreeBSD
+## CPU Type: Intel, AMD, Cyrix
+## Oper Sys: FreeBSD 4.2
+## Compiler: f77 , aka g77
+##
+
+F77 = ${FC}
+LIBS =
+F77FLAGS = -c %%FFLAGS%%
+LINKFLAGS =
+OPTFLAGS =
+LIBFLAGS = -rcuv
+
+##
## Machine: Generic Linux
## CPU Type: Intel x86 Compatible
## Oper Sys: Fedora Core
@@ -102,12 +116,12 @@
## Compiler: Intel Fortran for Mac 11
##
-F77 = /opt/intel/Compiler/11.1/058/bin/intel64/ifort
-LIBS =
-F77FLAGS = -c -axSSSE3 -vec-report0
-OPTFLAGS = -O3 -no-ipo -no-prec-div
-LIBFLAGS = -crusv
-LINKFLAGS = -static-intel -mmacosx-version-min=10.4
+#F77 = /opt/intel/Compiler/11.1/058/bin/intel64/ifort
+#LIBS =
+#F77FLAGS = -c -axSSSE3 -vec-report0
+#OPTFLAGS = -O3 -no-ipo -no-prec-div
+#LIBFLAGS = -crusv
+#LINKFLAGS = -static-intel -mmacosx-version-min=10.4
##
## Machine: Macintosh (PPC)
@@ -584,6 +598,8 @@
xyzpdb.x \
xyzsybyl.x
+.SUFFIXES: .x
+
.f.o:
${F77} ${F77FLAGS} ${OPTFLAGS} $*.f
@@ -596,8 +612,8 @@
server.o:
${F77} ${F77FLAGS} ${OPTFLAGS} server.f
-%.x: %.o libtinker.a
- ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}
+.o.x: libtinker.a
+ ${F77} ${LINKFLAGS} -o $@ $< libtinker.a ${LIBS}
all: ${EXEFILES}
@@ -608,63 +624,63 @@
cat *.i *.f > tinker.txt
rename:
- mv alchemy.x $(BINDIR)/alchemy
- mv analyze.x $(BINDIR)/analyze
- mv anneal.x $(BINDIR)/anneal
- mv archive.x $(BINDIR)/archive
- mv correlate.x $(BINDIR)/correlate
- mv crystal.x $(BINDIR)/crystal
- mv diffuse.x $(BINDIR)/diffuse
- mv distgeom.x $(BINDIR)/distgeom
- mv document.x $(BINDIR)/document
- mv dynamic.x $(BINDIR)/dynamic
- mv gda.x $(BINDIR)/gda
- mv intedit.x $(BINDIR)/intedit
- mv intxyz.x $(BINDIR)/intxyz
- mv minimize.x $(BINDIR)/minimize
- mv minirot.x $(BINDIR)/minirot
- mv minrigid.x $(BINDIR)/minrigid
- mv monte.x $(BINDIR)/monte
- mv newton.x $(BINDIR)/newton
- mv newtrot.x $(BINDIR)/newtrot
- mv nucleic.x $(BINDIR)/nucleic
- mv optimize.x $(BINDIR)/optimize
- mv optirot.x $(BINDIR)/optirot
- mv optrigid.x $(BINDIR)/optrigid
- mv path.x $(BINDIR)/path
- mv pdbxyz.x $(BINDIR)/pdbxyz
- mv polarize.x $(BINDIR)/polarize
- mv poledit.x $(BINDIR)/poledit
- mv potential.x $(BINDIR)/potential
- mv prmedit.x $(BINDIR)/prmedit
- mv protein.x $(BINDIR)/protein
- mv pss.x $(BINDIR)/pss
- mv pssrigid.x $(BINDIR)/pssrigid
- mv pssrot.x $(BINDIR)/pssrot
- mv radial.x $(BINDIR)/radial
- mv saddle.x $(BINDIR)/saddle
- mv scan.x $(BINDIR)/scan
- mv sniffer.x $(BINDIR)/sniffer
- mv spacefill.x $(BINDIR)/spacefill
- mv spectrum.x $(BINDIR)/spectrum
- mv superpose.x $(BINDIR)/superpose
- mv sybylxyz.x $(BINDIR)/sybylxyz
- mv testgrad.x $(BINDIR)/testgrad
- mv testhess.x $(BINDIR)/testhess
- mv testpair.x $(BINDIR)/testpair
- mv testrot.x $(BINDIR)/testrot
- mv timer.x $(BINDIR)/timer
- mv timerot.x $(BINDIR)/timerot
- mv valence.x $(BINDIR)/valence
- mv vibbig.x $(BINDIR)/vibbig
- mv vibrate.x $(BINDIR)/vibrate
- mv vibrot.x $(BINDIR)/vibrot
- mv xtalfit.x $(BINDIR)/xtalfit
- mv xtalmin.x $(BINDIR)/xtalmin
- mv xyzedit.x $(BINDIR)/xyzedit
- mv xyzint.x $(BINDIR)/xyzint
- mv xyzpdb.x $(BINDIR)/xyzpdb
- mv xyzsybyl.x $(BINDIR)/xyzsybyl
+ ${INSTALL_PROGRAM} alchemy.x $(BINDIR)/alchemy
+ ${INSTALL_PROGRAM} analyze.x $(BINDIR)/analyze
+ ${INSTALL_PROGRAM} anneal.x $(BINDIR)/anneal
+ ${INSTALL_PROGRAM} archive.x $(BINDIR)/archive
+ ${INSTALL_PROGRAM} correlate.x $(BINDIR)/correlate
+ ${INSTALL_PROGRAM} crystal.x $(BINDIR)/crystal
+ ${INSTALL_PROGRAM} diffuse.x $(BINDIR)/diffuse
+ ${INSTALL_PROGRAM} distgeom.x $(BINDIR)/distgeom
+ ${INSTALL_PROGRAM} document.x $(BINDIR)/document
+ ${INSTALL_PROGRAM} dynamic.x $(BINDIR)/dynamic
+ ${INSTALL_PROGRAM} gda.x $(BINDIR)/gda
+ ${INSTALL_PROGRAM} intedit.x $(BINDIR)/intedit
+ ${INSTALL_PROGRAM} intxyz.x $(BINDIR)/intxyz
+ ${INSTALL_PROGRAM} minimize.x $(BINDIR)/minimize
+ ${INSTALL_PROGRAM} minirot.x $(BINDIR)/minirot
+ ${INSTALL_PROGRAM} minrigid.x $(BINDIR)/minrigid
+ ${INSTALL_PROGRAM} monte.x $(BINDIR)/monte
+ ${INSTALL_PROGRAM} newton.x $(BINDIR)/newton
+ ${INSTALL_PROGRAM} newtrot.x $(BINDIR)/newtrot
+ ${INSTALL_PROGRAM} nucleic.x $(BINDIR)/nucleic
+ ${INSTALL_PROGRAM} optimize.x $(BINDIR)/optimize
+ ${INSTALL_PROGRAM} optirot.x $(BINDIR)/optirot
+ ${INSTALL_PROGRAM} optrigid.x $(BINDIR)/optrigid
+ ${INSTALL_PROGRAM} path.x $(BINDIR)/path
+ ${INSTALL_PROGRAM} pdbxyz.x $(BINDIR)/pdbxyz
+ ${INSTALL_PROGRAM} polarize.x $(BINDIR)/polarize
+ ${INSTALL_PROGRAM} poledit.x $(BINDIR)/poledit
+ ${INSTALL_PROGRAM} potential.x $(BINDIR)/potential
+ ${INSTALL_PROGRAM} prmedit.x $(BINDIR)/prmedit
+ ${INSTALL_PROGRAM} protein.x $(BINDIR)/protein
+ ${INSTALL_PROGRAM} pss.x $(BINDIR)/pss
+ ${INSTALL_PROGRAM} pssrigid.x $(BINDIR)/pssrigid
+ ${INSTALL_PROGRAM} pssrot.x $(BINDIR)/pssrot
+ ${INSTALL_PROGRAM} radial.x $(BINDIR)/radial
+ ${INSTALL_PROGRAM} saddle.x $(BINDIR)/saddle
+ ${INSTALL_PROGRAM} scan.x $(BINDIR)/scan
+ ${INSTALL_PROGRAM} sniffer.x $(BINDIR)/sniffer
+ ${INSTALL_PROGRAM} spacefill.x $(BINDIR)/spacefill
+ ${INSTALL_PROGRAM} spectrum.x $(BINDIR)/spectrum
+ ${INSTALL_PROGRAM} superpose.x $(BINDIR)/superpose
+ ${INSTALL_PROGRAM} sybylxyz.x $(BINDIR)/sybylxyz
+ ${INSTALL_PROGRAM} testgrad.x $(BINDIR)/testgrad
+ ${INSTALL_PROGRAM} testhess.x $(BINDIR)/testhess
+ ${INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair
+ ${INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot
+ ${INSTALL_PROGRAM} timer.x $(BINDIR)/timer
+ ${INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot
+ ${INSTALL_PROGRAM} valence.x $(BINDIR)/valence
+ ${INSTALL_PROGRAM} vibbig.x $(BINDIR)/vibbig
+ ${INSTALL_PROGRAM} vibrate.x $(BINDIR)/vibrate
+ ${INSTALL_PROGRAM} vibrot.x $(BINDIR)/vibrot
+ ${INSTALL_PROGRAM} xtalfit.x $(BINDIR)/xtalfit
+ ${INSTALL_PROGRAM} xtalmin.x $(BINDIR)/xtalmin
+ ${INSTALL_PROGRAM} xyzedit.x $(BINDIR)/xyzedit
+ ${INSTALL_PROGRAM} xyzint.x $(BINDIR)/xyzint
+ ${INSTALL_PROGRAM} xyzpdb.x $(BINDIR)/xyzpdb
+ ${INSTALL_PROGRAM} xyzsybyl.x $(BINDIR)/xyzsybyl
remove_links:
rm -f $(LINKDIR)/alchemy

5
biology/tinker/files/patch-ah
View File

@ -1,5 +0,0 @@
--- ../bench/bench1.run.orig Tue Jul 24 14:02:20 2001
+++ ../bench/bench1.run Wed Sep 5 13:57:02 2001
@@ -1 +1 @@
-../bin/timer bench1 1 y
+timer bench1 1 y

5
biology/tinker/files/patch-ai
View File

@ -1,5 +0,0 @@
--- ../bench/bench2.run.orig Tue Jul 24 14:02:20 2001
+++ ../bench/bench2.run Wed Sep 5 13:58:47 2001
@@ -1 +1 @@
-../bin/timer bench2 1 y
+timer bench2 1 y

5
biology/tinker/files/patch-aj
View File

@ -1,5 +0,0 @@
--- ../bench/bench3.run.orig Wed Sep 5 14:00:09 2001
+++ ../bench/bench3.run Wed Sep 5 14:01:27 2001
@@ -1 +1 @@
-time ../bin/vibrate bench3 0
+time vibrate bench3 0

5
biology/tinker/files/patch-bench__bench1.run Normal file
View File

@ -0,0 +1,5 @@
--- bench/bench1.run.orig Tue Jul 24 14:02:20 2001
+++ bench/bench1.run Wed Sep 5 13:57:02 2001
@@ -1 +1 @@
-../bin/timer bench1 1 y
+timer bench1 1 y

5
biology/tinker/files/patch-bench__bench2.run Normal file
View File

@ -0,0 +1,5 @@
--- bench/bench2.run.orig Tue Jul 24 14:02:20 2001
+++ bench/bench2.run Wed Sep 5 13:58:47 2001
@@ -1 +1 @@
-../bin/timer bench2 1 y
+timer bench2 1 y

5
biology/tinker/files/patch-bench__bench3.run Normal file
View File

@ -0,0 +1,5 @@
--- bench/bench3.run.orig Wed Sep 5 14:00:09 2001
+++ bench/bench3.run Wed Sep 5 14:01:27 2001
@@ -1 +1 @@
-time ../bin/vibrate bench3 0
+time vibrate bench3 0

4
biology/tinker/files/patch-ak → biology/tinker/files/patch-bench__bench4.run
View File

@ -1,5 +1,5 @@
--- ../bench/bench4.run.orig Tue Jul 24 14:02:20 2001
+++ ../bench/bench4.run Wed Sep 5 14:02:17 2001
--- bench/bench4.run.orig Tue Jul 24 14:02:20 2001
+++ bench/bench4.run Wed Sep 5 14:02:17 2001
@@ -1,3 +1,3 @@
cp bench4.dyn0 bench4.dyn
-time ../bin/dynamic bench4 1000 1.0 10.0 2 298.0

4
biology/tinker/files/patch-al → biology/tinker/files/patch-bench__bench5.run
View File

@ -1,5 +1,5 @@
--- ../bench/bench5.run.orig 2010-08-25 00:58:15.000000000 +0400
+++ ../bench/bench5.run 2011-01-26 23:35:18.000000000 +0300
--- bench/bench5.run.orig 2010-08-25 00:58:15.000000000 +0400
+++ bench/bench5.run 2011-01-26 23:35:18.000000000 +0300
@@ -1,3 +1,3 @@
cp bench5.dyn0 bench5.dyn
-time ../bin/dynamic bench5 1000 1.0 10.0 2 298.0

211
biology/tinker/files/patch-make__Makefile Normal file
View File

@ -0,0 +1,211 @@
--- make/Makefile.orig 2012-06-29 14:51:42.000000000 +0900
+++ make/Makefile 2012-11-10 00:12:19.000000000 +0900
@@ -9,8 +9,8 @@
##
## 1. make all Build all the TINKER executables
## 2. make rename Move the executables to BINDIR
-## 3. make remove_links Create soft links in LINKDIR
-## 4. make create_links Remove soft links from LINKDIR
+## 3. make remove_links Remove soft links in LINKDIR
+## 4. make create_links Create soft links from LINKDIR
## 6. make listing Concatenate source to tinker.txt
## 5. make clean Delete objects and executables
##
@@ -30,9 +30,9 @@
## LINKDIR Linked Copies of TINKER Executables
##
-TINKERDIR = /Users/ponder/tinker
-BINDIR = $(TINKERDIR)/bin
-LINKDIR = /usr/local/bin
+TINKERDIR = ${WRKDIR}
+BINDIR = ${PREFIX}/bin
+#LINKDIR = /usr/local/bin
####################################################################
## Known Machine Types; Uncomment One of the Following Sections ##
@@ -40,6 +40,20 @@
####################################################################
##
+## Machine: IntelPC / FreeBSD
+## CPU Type: Intel, AMD, Cyrix
+## Oper Sys: FreeBSD 4.2
+## Compiler: f77 , aka g77
+##
+
+F77 = ${FC}
+LIBS =
+F77FLAGS = -c ${FFLAGS}
+LINKFLAGS = ${LDFLAGS}
+OPTFLAGS =
+LIBFLAGS = -rcuv
+
+##
## Machine: Generic Linux
## CPU Type: Intel x86 Compatible
## Oper Sys: Fedora Core
@@ -104,12 +118,12 @@
## Parallel: OpenMP
##
-F77 = /opt/intel/bin/ifort
-LIBS = -L$(TINKERDIR)/fftw/lib -lfftw3_omp -lfftw3
-F77FLAGS = -c -axSSSE3 -assume cc_omp
-OPTFLAGS = -O3 -no-ipo -no-prec-div -openmp
-LIBFLAGS = -crusv
-LINKFLAGS = $(OPTFLAGS) -static-intel -mmacosx-version-min=10.4
+#F77 = /opt/intel/bin/ifort
+#LIBS = -L$(TINKERDIR)/fftw/lib -lfftw3_omp -lfftw3
+#F77FLAGS = -c -axSSSE3 -assume cc_omp
+#OPTFLAGS = -O3 -no-ipo -no-prec-div -openmp
+#LIBFLAGS = -crusv
+#LINKFLAGS = $(OPTFLAGS) -static-intel -mmacosx-version-min=10.4
##
## Machine: Macintosh
@@ -592,6 +606,8 @@
xyzpdb.x \
xyzsybyl.x
+.SUFFIXES: .x
+
.f.o:
${F77} ${F77FLAGS} ${OPTFLAGS} $*.f
@@ -601,8 +617,8 @@
server.o:
${F77} ${F77FLAGS} ${OPTFLAGS} server.f
-%.x: %.o libtinker.a
- ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}; strip $@
+.o.x: libtinker.a
+ ${F77} ${LINKFLAGS} -o $@ $< libtinker.a ${LIBS}
all: ${EXEFILES}
@@ -613,65 +629,65 @@
cat *.i *.f *.c > tinker.txt
rename:
- mv alchemy.x $(BINDIR)/alchemy
- mv analyze.x $(BINDIR)/analyze
- mv anneal.x $(BINDIR)/anneal
- mv archive.x $(BINDIR)/archive
- mv correlate.x $(BINDIR)/correlate
- mv crystal.x $(BINDIR)/crystal
- mv diffuse.x $(BINDIR)/diffuse
- mv distgeom.x $(BINDIR)/distgeom
- mv document.x $(BINDIR)/document
- mv dynamic.x $(BINDIR)/dynamic
- mv gda.x $(BINDIR)/gda
- mv intedit.x $(BINDIR)/intedit
- mv intxyz.x $(BINDIR)/intxyz
- mv minimize.x $(BINDIR)/minimize
- mv minirot.x $(BINDIR)/minirot
- mv minrigid.x $(BINDIR)/minrigid
- mv molxyz.x $(BINDIR)/molxyz
- mv monte.x $(BINDIR)/monte
- mv newton.x $(BINDIR)/newton
- mv newtrot.x $(BINDIR)/newtrot
- mv nucleic.x $(BINDIR)/nucleic
- mv optimize.x $(BINDIR)/optimize
- mv optirot.x $(BINDIR)/optirot
- mv optrigid.x $(BINDIR)/optrigid
- mv path.x $(BINDIR)/path
- mv pdbxyz.x $(BINDIR)/pdbxyz
- mv polarize.x $(BINDIR)/polarize
- mv poledit.x $(BINDIR)/poledit
- mv potential.x $(BINDIR)/potential
- mv prmedit.x $(BINDIR)/prmedit
- mv protein.x $(BINDIR)/protein
- mv pss.x $(BINDIR)/pss
- mv pssrigid.x $(BINDIR)/pssrigid
- mv pssrot.x $(BINDIR)/pssrot
- mv radial.x $(BINDIR)/radial
- mv saddle.x $(BINDIR)/saddle
- mv scan.x $(BINDIR)/scan
- mv sniffer.x $(BINDIR)/sniffer
- mv spacefill.x $(BINDIR)/spacefill
- mv spectrum.x $(BINDIR)/spectrum
- mv superpose.x $(BINDIR)/superpose
- mv sybylxyz.x $(BINDIR)/sybylxyz
- mv testgrad.x $(BINDIR)/testgrad
- mv testhess.x $(BINDIR)/testhess
- mv testpair.x $(BINDIR)/testpair
- mv testrot.x $(BINDIR)/testrot
- mv timer.x $(BINDIR)/timer
- mv timerot.x $(BINDIR)/timerot
- mv torsfit.x $(BINDIR)/torsfit
- mv valence.x $(BINDIR)/valence
- mv vibbig.x $(BINDIR)/vibbig
- mv vibrate.x $(BINDIR)/vibrate
- mv vibrot.x $(BINDIR)/vibrot
- mv xtalfit.x $(BINDIR)/xtalfit
- mv xtalmin.x $(BINDIR)/xtalmin
- mv xyzedit.x $(BINDIR)/xyzedit
- mv xyzint.x $(BINDIR)/xyzint
- mv xyzpdb.x $(BINDIR)/xyzpdb
- mv xyzsybyl.x $(BINDIR)/xyzsybyl
+ ${BSD_INSTALL_PROGRAM} alchemy.x $(BINDIR)/alchemy
+ ${BSD_INSTALL_PROGRAM} analyze.x $(BINDIR)/analyze
+ ${BSD_INSTALL_PROGRAM} anneal.x $(BINDIR)/anneal
+ ${BSD_INSTALL_PROGRAM} archive.x $(BINDIR)/archive
+ ${BSD_INSTALL_PROGRAM} correlate.x $(BINDIR)/correlate
+ ${BSD_INSTALL_PROGRAM} crystal.x $(BINDIR)/crystal
+ ${BSD_INSTALL_PROGRAM} diffuse.x $(BINDIR)/diffuse
+ ${BSD_INSTALL_PROGRAM} distgeom.x $(BINDIR)/distgeom
+ ${BSD_INSTALL_PROGRAM} document.x $(BINDIR)/document
+ ${BSD_INSTALL_PROGRAM} dynamic.x $(BINDIR)/dynamic
+ ${BSD_INSTALL_PROGRAM} gda.x $(BINDIR)/gda
+ ${BSD_INSTALL_PROGRAM} intedit.x $(BINDIR)/intedit
+ ${BSD_INSTALL_PROGRAM} intxyz.x $(BINDIR)/intxyz
+ ${BSD_INSTALL_PROGRAM} minimize.x $(BINDIR)/minimize
+ ${BSD_INSTALL_PROGRAM} minirot.x $(BINDIR)/minirot
+ ${BSD_INSTALL_PROGRAM} minrigid.x $(BINDIR)/minrigid
+ ${BSD_INSTALL_PROGRAM} molxyz.x $(BINDIR)/molxyz
+ ${BSD_INSTALL_PROGRAM} monte.x $(BINDIR)/monte
+ ${BSD_INSTALL_PROGRAM} newton.x $(BINDIR)/newton
+ ${BSD_INSTALL_PROGRAM} newtrot.x $(BINDIR)/newtrot
+ ${BSD_INSTALL_PROGRAM} nucleic.x $(BINDIR)/nucleic
+ ${BSD_INSTALL_PROGRAM} optimize.x $(BINDIR)/optimize
+ ${BSD_INSTALL_PROGRAM} optirot.x $(BINDIR)/optirot
+ ${BSD_INSTALL_PROGRAM} optrigid.x $(BINDIR)/optrigid
+ ${BSD_INSTALL_PROGRAM} path.x $(BINDIR)/path
+ ${BSD_INSTALL_PROGRAM} pdbxyz.x $(BINDIR)/pdbxyz
+ ${BSD_INSTALL_PROGRAM} polarize.x $(BINDIR)/polarize
+ ${BSD_INSTALL_PROGRAM} poledit.x $(BINDIR)/poledit
+ ${BSD_INSTALL_PROGRAM} potential.x $(BINDIR)/potential
+ ${BSD_INSTALL_PROGRAM} prmedit.x $(BINDIR)/prmedit
+ ${BSD_INSTALL_PROGRAM} protein.x $(BINDIR)/protein
+ ${BSD_INSTALL_PROGRAM} pss.x $(BINDIR)/pss
+ ${BSD_INSTALL_PROGRAM} pssrigid.x $(BINDIR)/pssrigid
+ ${BSD_INSTALL_PROGRAM} pssrot.x $(BINDIR)/pssrot
+ ${BSD_INSTALL_PROGRAM} radial.x $(BINDIR)/radial
+ ${BSD_INSTALL_PROGRAM} saddle.x $(BINDIR)/saddle
+ ${BSD_INSTALL_PROGRAM} scan.x $(BINDIR)/scan
+ ${BSD_INSTALL_PROGRAM} sniffer.x $(BINDIR)/sniffer
+ ${BSD_INSTALL_PROGRAM} spacefill.x $(BINDIR)/spacefill
+ ${BSD_INSTALL_PROGRAM} spectrum.x $(BINDIR)/spectrum
+ ${BSD_INSTALL_PROGRAM} superpose.x $(BINDIR)/superpose
+ ${BSD_INSTALL_PROGRAM} sybylxyz.x $(BINDIR)/sybylxyz
+ ${BSD_INSTALL_PROGRAM} testgrad.x $(BINDIR)/testgrad
+ ${BSD_INSTALL_PROGRAM} testhess.x $(BINDIR)/testhess
+ ${BSD_INSTALL_PROGRAM} testpair.x $(BINDIR)/testpair
+ ${BSD_INSTALL_PROGRAM} testrot.x $(BINDIR)/testrot
+ ${BSD_INSTALL_PROGRAM} timer.x $(BINDIR)/timer
+ ${BSD_INSTALL_PROGRAM} timerot.x $(BINDIR)/timerot
+ ${BSD_INSTALL_PROGRAM} torsfit.x $(BINDIR)/torsfit
+ ${BSD_INSTALL_PROGRAM} valence.x $(BINDIR)/valence
+ ${BSD_INSTALL_PROGRAM} vibbig.x $(BINDIR)/vibbig
+ ${BSD_INSTALL_PROGRAM} vibrate.x $(BINDIR)/vibrate
+ ${BSD_INSTALL_PROGRAM} vibrot.x $(BINDIR)/vibrot
+ ${BSD_INSTALL_PROGRAM} xtalfit.x $(BINDIR)/xtalfit
+ ${BSD_INSTALL_PROGRAM} xtalmin.x $(BINDIR)/xtalmin
+ ${BSD_INSTALL_PROGRAM} xyzedit.x $(BINDIR)/xyzedit
+ ${BSD_INSTALL_PROGRAM} xyzint.x $(BINDIR)/xyzint
+ ${BSD_INSTALL_PROGRAM} xyzpdb.x $(BINDIR)/xyzpdb
+ ${BSD_INSTALL_PROGRAM} xyzsybyl.x $(BINDIR)/xyzsybyl
remove_links:
rm -f $(LINKDIR)/alchemy

4
biology/tinker/files/patch-openend.f → biology/tinker/files/patch-source_openend.f
View File

@ -1,8 +1,8 @@
$FreeBSD$
--- openend.f.orig Fri Apr 18 13:31:51 2003
+++ openend.f Mon Jul 21 13:36:11 2003
--- source/openend.f.orig Fri Apr 18 13:31:51 2003
+++ source/openend.f Mon Jul 21 13:36:11 2003
@@ -29,11 +29,11 @@
c
c standard Fortran 90, unavailable in some Fortran 77 compilers

6
biology/tinker/files/pkg-message.in Normal file
View File

@ -0,0 +1,6 @@
**********************************************************
The author requests that you return a license form
to him if you find Tinker to be useful.
See %%DOCSDIR%% for license forms.
**********************************************************"

991
biology/tinker/pkg-plist
View File

File diff suppressed because it is too large Load Diff