Initial import of artemis 4.0

Artemis is a  DNA sequence viewer and annotation tool.

PR: 32914
Submitted by: Camson <chuynh@biolateral.com.au>

biology/Makefile

@@ -1,6 +1,7 @@
 # $FreeBSD$
 #
 
+    SUBDIR += artemis
     SUBDIR += babel
     SUBDIR += biojava
     SUBDIR += chemeq

biology/artemis/Makefile

@@ -0,0 +1,33 @@
+# New ports collection makefile for:	artemis
+# Date created:				10 Nov 2001
+# Whom:					camson@bilateral.com.au
+#
+# $FreeBSD$
+#
+
+PORTNAME=	artemis
+PORTVERSION=	4.0
+CATEGORIES=	biology
+MASTER_SITES=	http://www.sanger.ac.uk/Software/Artemis/v4/
+DISTNAME=	artemis_compiled_v4
+
+MAINTAINER=	chuynh@biolateral.com.au
+
+RUN_DEPENDS=	${JAVA_COMMAND}:${PORTSDIR}/java/jdk13
+
+WRKSRC=		${WRKDIR}/${PORTNAME}
+
+JDK_VERSION=	1.3.1
+JDK_DIR=	${PREFIX}/jdk${JDK_VERSION}
+JAVA_COMMAND=	${JDK_DIR}/bin/java
+
+NO_BUILD=	yes
+
+do-install:
+	@${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION}
+	@${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf-
+	@${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/art ${PREFIX}/bin/art
+
+PLIST_SUB=	PORTVERSION="${PORTVERSION}"
+
+.include <bsd.port.mk>

biology/artemis/distinfo

@@ -0,0 +1 @@
+MD5 (artemis_compiled_v4.tar.gz) = e970b57e993a6b6d254ae70f83e1304e

biology/artemis/pkg-comment

@@ -0,0 +1 @@
+A DNA sequence viewer and annotation tool

biology/artemis/pkg-descr

@@ -0,0 +1,7 @@
+Artemis is a DNA sequence viewer and annotation tool that allows visualisation
+of sequence features and the results of analyses within the context of the
+sequence, and its six-frame translation.  Artemis is written in Java, reads
+EMBL or GENBANK format sequences and feature tables, and can work on sequences
+of any size.
+
+WWW:  http://www.sanger.ac.uk/Software/Artemis/manual