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Code Issues Releases Activity

- Update to 2.4.1

Browse Source 
PR:		119719
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
This commit is contained in:
Martin Wilke 2008-01-20 21:56:24 +00:00
parent 081fbf3fa2
commit 31b078b9f7
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=205912
4 changed files with 46 additions and 15 deletions
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7
biology/migrate/Makefile
View File

@ -6,9 +6,10 @@
#
PORTNAME= migrate
PORTVERSION= 2.3
PORTVERSION= 2.4.1
CATEGORIES= biology
MASTER_SITES= http://popgen.csit.fsu.edu/currentversion/
MASTER_SITES= http://popgen.csit.fsu.edu/%SUBDIR%/
MASTER_SITE_SUBDIR= currentversion oldversions/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}.src
MAINTAINER= ports@FreeBSD.org
@ -42,8 +43,6 @@ ALL_TARGET= all
post-patch:
@${REINPLACE_CMD} -e \
's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|@CFLAGS@||g ; \
s|make -f|$$(MAKE) -f|g' ${WRKSRC}/Makefile.in
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/migrate-n ${PREFIX}/bin

6
biology/migrate/distinfo
View File

@ -1,3 +1,3 @@
MD5 (migrate-2.3.src.tar.gz) = 12dbf7bd9d69b6ba87a9ba16b68ff7e5
SHA256 (migrate-2.3.src.tar.gz) = 3407a92b41f23d036a6ef5fd11f77e6d1aa8ee39fa4f61c65b0f71670b8b8f62
SIZE (migrate-2.3.src.tar.gz) = 1952466
MD5 (migrate-2.4.1.src.tar.gz) = cd0e1d2bb551d09b553d833bb90a5df5
SHA256 (migrate-2.4.1.src.tar.gz) = 09cb370f6911794d94b721e0f2a1a26c5f3bde5b2e55256f52ad57e9a0c0cdee
SIZE (migrate-2.4.1.src.tar.gz) = 1950793

40
biology/migrate/files/patch-Makefile.in Normal file
View File

@ -0,0 +1,40 @@
--- Makefile.in.orig Thu Jan 10 10:33:23 2008
+++ Makefile.in Sun Jan 13 04:43:42 2008
@@ -56,11 +56,11 @@
# machines or ./configure --enable-altivec on PowerPC architectures, this will then set the option
# correctly
HARDWARECFLAGS = @HARDWARECFLAGS@
-COMMONFLAGS = $(ARCH) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS)
+COMMONFLAGS = -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS)
#
# combine the common flags with the version number and subversion number
COMMONVFLAGS = $(COMMONFLAGS) -DMIGRATESUBVERSION=\"\\\"$(MIGRATESUBVERSION)\\\"\"
-CFLAGS = @CFLAGS@ $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\"$(MIGRATEVERSION)\\\"\"
+CFLAGS = $(COMMONVFLAGS) -DMIGRATEVERSION=\"\\\"$(MIGRATEVERSION)\\\"\"
# IBM xlc compiler
# CC = xlc
# CFLAGS_XLC = -O3 -Q -qunroll -qalloca -qhot -qipa -qthreaded
@@ -151,8 +151,8 @@
@echo "----------------------------------------------------"
$(MAKE) all
-all:: haru
- $(MAKE) $(NAME) "CFLAGS = $(CFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS = $(LDFLAGS) -fexceptions"
+all::
+ $(MAKE) $(NAME) "CFLAGS = $(CFLAGS)" "LIBS = $(LIBS)" "LDFLAGS = $(LDFLAGS) -fexceptions"
debug::
$(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS)"
@@ -274,10 +274,10 @@
-/bin/chmod +x $(CONFIGUREEXEC)
haru::
- (cd ./haru ; make -f makefile.osx "CC=$(CC)" "CPP=$(CC)" "ARCH=$(ARCH)")
+ (cd ./haru ; $(MAKE) -f makefile.osx "CC=$(CC)" "CPP=$(CC)" "ARCH=")
haru-clean::
- (cd ./haru ; make -f makefile.osx clean)
+ (cd ./haru ; $(MAKE) -f makefile.osx clean)
distrib::
$(MAKE) srcdistrib;

8
biology/migrate/pkg-plist
View File

@ -9,20 +9,12 @@ bin/migrate-n
%%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif
%%PORTDOCS%%%%DOCSDIR%%/migrate.html
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bayesfile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/infile.benchmark
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/infile.ep
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/infile.msat
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/infile.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/outfile-bayes
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/outfile-bayes-saved
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/outfile-ml-saved
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/outfile.pdf
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile.benchmark
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile.ep
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile.msat
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile.testbayes
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parmfile.testml
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%