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biology/diamond: Update to version 2.0.0

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Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v2.0.0
This commit is contained in:
Joseph Mingrone 2020-07-28 02:39:00 +00:00
parent 1fb19363b8
commit 32248779ba
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=543567
3 changed files with 4 additions and 14 deletions
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2
biology/diamond/Makefile
View File

@ -2,7 +2,7 @@
PORTNAME= diamond
DISTVERSIONPREFIX= v
DISTVERSION= 0.9.36
DISTVERSION= 2.0.0
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org

6
biology/diamond/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1593736895
SHA256 (bbuchfink-diamond-v0.9.36_GH0.tar.gz) = 870af89606330f6c0b57ed478d2d8237334ce8f5630eac770399ff431948bd59
SIZE (bbuchfink-diamond-v0.9.36_GH0.tar.gz) = 1104423
TIMESTAMP = 1595902695
SHA256 (bbuchfink-diamond-v2.0.0_GH0.tar.gz) = 0a2bbc8f0fc96d124d37e014f43dd5590a84eb2772428288e8b239b78e9a1058
SIZE (bbuchfink-diamond-v2.0.0_GH0.tar.gz) = 1104518

10
biology/diamond/files/patch-src_search_collision.cpp
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@ -1,10 +0,0 @@
--- src/search/collision.cpp.orig 2020-07-03 10:58:27 UTC
+++ src/search/collision.cpp
@@ -92,7 +92,6 @@ bool is_primary_hit(const Letter *query,
const unsigned sid,
const unsigned len)
{
- assert(len > 0 && len <= config.window * 2);
const bool chunked(config.lowmem > 1);
uint64_t mask = reduced_match32(query, subject, len);
unsigned i = 0;