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science/lammps: Enable all packages that don't require dependencies, and USER-H5MD that does require dependencies

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This commit is contained in:
Yuri Victorovich 2020-05-03 04:25:42 +00:00
parent 70b0d7edf1
commit 3305d3ec76
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=533742
2 changed files with 26 additions and 7 deletions
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22
science/lammps/Makefile
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@ -2,7 +2,7 @@
PORTNAME= lammps
PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/}
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/
@ -38,23 +38,26 @@ CMAKE_ARGS_gcc= -DBUILD_OMP:BOOL=false
# enable packages (for a complete list see STANDARD_PACKAGES in cmake/CMakeLists.txt)
CMAKE_ON+= PKG_ASPHERE PKG_BODY PKG_CLASS2 PKG_COLLOID PKG_COMPRESS PKG_DIPOLE
CMAKE_ON+= PKG_GRANULAR PKG_KSPACE PKG_MANYBODY PKG_MC PKG_MESSAGE PKG_MOLECULE PKG_PERI PKG_POEMS PKG_QEQ
CMAKE_ON+= PKG_GRANULAR PKG_KSPACE PKG_MANYBODY PKG_MC PKG_MESSAGE PKG_MISC PKG_MOLECULE PKG_PERI PKG_POEMS PKG_QEQ
CMAKE_ON+= PKG_REPLICA PKG_RIGID PKG_SHOCK PKG_SPIN PKG_SNAP PKG_SRD
CMAKE_ON+= PKG_USER-ATC PKG_USER-AWPMD PKG_USER-BOCS PKG_USER-CGDNA PKG_USER-MESODPD PKG_USER-CGSDK PKG_USER-COLVARS
CMAKE_ON+= PKG_USER-DIFFRACTION PKG_USER-DPD PKG_USER-DRUDE PKG_USER-EFF PKG_USER-FEP PKG_USER-LB
CMAKE_ON+= PKG_USER-MANIFOLD PKG_USER-MEAMC PKG_USER-MGPT PKG_USER-MISC PKG_USER-MOFFF PKG_USER-MOLFILE
# PKG_MISC is broken: https://github.com/lammps/lammps/issues/2057
# PKG_KIM is broken: https://github.com/lammps/lammps/issues/2059
# Packages requiring extra downloades or dependencies: PKG_MSCG
CMAKE_ON+= PKG_USER-PHONON PKG_USER-PTM PKG_USER-QTB PKG_USER-REACTION
CMAKE_ON+= PKG_USER-REAXC PKG_USER-SDPD PKG_USER-SMD PKG_USER-SMTBQ PKG_USER-SPH PKG_USER-TALLY
CMAKE_ON+= PKG_USER-UEF PKG_USER-QMMM PKG_USER-YAFF
# Packages requiring extra downloades or dependencies: PKG_MSCG PKG_USER-ADIOS2 PKG_USER-NETCDF PKG_USER-QUIP PKG_USER-VTK PKG_KIM PKG_USER-PLUMED PKG_USER-SCAFACOS
OPTIONS_DEFINE= JPEG PNG GZIP FFMPEG
OPTIONS_DEFINE_clang= OPENMP
OPTIONS_GROUP= PARALLEL PACKAGES
OPTIONS_DEFAULT= MPI JPEG PNG GZIP FFMPEG KOKKOS VORONOI LATTE ${OPTIONS_DEFAULT_${CHOSEN_COMPILER_TYPE}}
OPTIONS_DEFAULT= MPI JPEG PNG GZIP FFMPEG H5MD KOKKOS VORONOI LATTE ${OPTIONS_DEFAULT_${CHOSEN_COMPILER_TYPE}}
OPTIONS_DEFAULT_clang= OPENMP
OPTIONS_SUB= yes
PARALLEL_DESC= Enable parallelizations:
PACKAGES_DESC= Enable packages:
OPTIONS_GROUP_PARALLEL= MPI ${OPTIONS_DEFINE_${CHOSEN_COMPILER_TYPE}}
OPTIONS_GROUP_PACKAGES= KOKKOS VORONOI LATTE
OPTIONS_GROUP_PACKAGES= H5MD KOKKOS VORONOI LATTE
MPI_CMAKE_BOOL= BUILD_MPI PKG_MPIIO
MPI_LIB_DEPENDS= libmpi.so:net/openmpi
@ -74,6 +77,11 @@ GZIP_CMAKE_BOOL= WITH_GZIP
FFMPEG_CMAKE_BOOL= WITH_FFMPEG
H5MD_DESC= USER-H5MD package based on libhdf5
H5MD_CMAKE_BOOL= PKG_USER-H5MD
H5MD_LIB_DEPENDS= libhdf5.so:science/hdf5 \
libsz.so:science/szip
KOKKOS_DESC= kokkos package based on the libkokkos library
KOKKOS_CMAKE_BOOL= PKG_KOKKOS EXTERNAL_KOKKOS
KOKKOS_LIB_DEPENDS= libkokkoscore.so:devel/kokkos

11
science/lammps/files/patch-lib_atc_Function.cpp Normal file
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@ -0,0 +1,11 @@
https://github.com/lammps/lammps/issues/2062
--- lib/atc/Function.cpp.orig 2020-05-03 03:21:56 UTC
+++ lib/atc/Function.cpp
@@ -1,5 +1,5 @@
#ifndef _WIN32
-#include <alloca.h>
+#include <stdlib.h>
#endif
#include "Function.h"
#include "ATC_Error.h"