mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-19 00:13:33 +00:00
math/py-pyreadr: Add py-pyreadr 0.4.2
pyreadr is a python package to read and write R RData and Rds files into/from pandas dataframes. It does not need to have R or other external dependencies installed. WWW: https://github.com/ofajardo/pyreadr
This commit is contained in:
Po-Chuan Hsieh
parent
fa80f820cf
commit
3482259da6
@ -872,6 +872,7 @@
|
||||
SUBDIR += py-pynndescent
|
||||
SUBDIR += py-pyodeint
|
||||
SUBDIR += py-pyodesys
|
||||
SUBDIR += py-pyreadr
|
||||
SUBDIR += py-pysmt
|
||||
SUBDIR += py-pystan
|
||||
SUBDIR += py-pysym
|
||||
|
||||
28
math/py-pyreadr/Makefile
Normal file
28
math/py-pyreadr/Makefile
Normal file
@ -0,0 +1,28 @@
|
||||
# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
|
||||
|
||||
PORTNAME= pyreadr
|
||||
PORTVERSION= 0.4.2
|
||||
CATEGORIES= math python
|
||||
MASTER_SITES= CHEESESHOP
|
||||
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
|
||||
|
||||
MAINTAINER= sunpoet@FreeBSD.org
|
||||
COMMENT= Read/write R RData and Rds files into/from pandas data frames
|
||||
|
||||
LICENSE= AGPLv3+
|
||||
|
||||
LIB_DEPENDS= librdata.so:math/librdata
|
||||
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>=0.24.0:math/py-pandas@${PY_FLAVOR}
|
||||
|
||||
USES= localbase python
|
||||
USE_PYTHON= autoplist concurrent cython distutils
|
||||
|
||||
post-patch:
|
||||
# Clean up bundled libraries
|
||||
@${RM} -fr ${WRKSRC}/pyreadr/libs/
|
||||
@${RM} -fr ${WRKSRC}/win_libs/
|
||||
|
||||
post-install:
|
||||
${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/pyreadr/librdata${PYTHON_EXT_SUFFIX}.so
|
||||
|
||||
.include <bsd.port.mk>
|
||||
3
math/py-pyreadr/distinfo
Normal file
3
math/py-pyreadr/distinfo
Normal file
@ -0,0 +1,3 @@
|
||||
TIMESTAMP = 1625585424
|
||||
SHA256 (pyreadr-0.4.2.tar.gz) = a878d0ee60ae8eff7d58ddb24ae6bfbec23b824040dc9fb3529b7104f039210f
|
||||
SIZE (pyreadr-0.4.2.tar.gz) = 1179813
|
||||
36
math/py-pyreadr/files/patch-pyreadr-librdata.c
Normal file
36
math/py-pyreadr/files/patch-pyreadr-librdata.c
Normal file
@ -0,0 +1,36 @@
|
||||
--- pyreadr/librdata.c.orig 2021-06-07 07:39:42 UTC
|
||||
+++ pyreadr/librdata.c
|
||||
@@ -4,8 +4,6 @@
|
||||
{
|
||||
"distutils": {
|
||||
"depends": [
|
||||
- "pyreadr/libs/librdata/src/rdata.h",
|
||||
- "pyreadr/libs/librdata/src/rdata_io_unistd.h"
|
||||
],
|
||||
"extra_compile_args": [
|
||||
"-DHAVE_ZLIB",
|
||||
@@ -23,13 +21,6 @@
|
||||
"name": "pyreadr.librdata",
|
||||
"sources": [
|
||||
"pyreadr/librdata.pyx",
|
||||
- "pyreadr/libs/librdata/src/CKHashTable.c",
|
||||
- "pyreadr/libs/librdata/src/rdata_bits.c",
|
||||
- "pyreadr/libs/librdata/src/rdata_error.c",
|
||||
- "pyreadr/libs/librdata/src/rdata_io_unistd.c",
|
||||
- "pyreadr/libs/librdata/src/rdata_parser.c",
|
||||
- "pyreadr/libs/librdata/src/rdata_read.c",
|
||||
- "pyreadr/libs/librdata/src/rdata_write.c"
|
||||
]
|
||||
},
|
||||
"module_name": "pyreadr.librdata"
|
||||
@@ -645,8 +636,8 @@ static CYTHON_INLINE float __PYX_NAN() {
|
||||
#include <time.h>
|
||||
#include <stdint.h>
|
||||
#include <sys/types.h>
|
||||
-#include "libs/librdata/src/rdata.h"
|
||||
-#include "libs/librdata/src/rdata_io_unistd.h"
|
||||
+#include <rdata.h>
|
||||
+#include <rdata_io_unistd.h>
|
||||
#include <sys/stat.h>
|
||||
#include <unistd.h>
|
||||
#include <fcntl.h>
|
||||
20
math/py-pyreadr/files/patch-pyreadr-librdata.pxd
Normal file
20
math/py-pyreadr/files/patch-pyreadr-librdata.pxd
Normal file
@ -0,0 +1,20 @@
|
||||
--- pyreadr/librdata.pxd.orig 2020-12-09 08:50:11 UTC
|
||||
+++ pyreadr/librdata.pxd
|
||||
@@ -11,7 +11,7 @@ cdef extern from '<sys/types.h>':
|
||||
cdef extern from 'Python.h':
|
||||
object PyByteArray_FromStringAndSize(const char *string, Py_ssize_t len)
|
||||
|
||||
-cdef extern from 'libs/librdata/src/rdata.h':
|
||||
+cdef extern from '<rdata.h>':
|
||||
|
||||
cdef enum rdata_type_t 'rdata_type_e':
|
||||
RDATA_TYPE_STRING
|
||||
@@ -128,7 +128,7 @@ cdef extern from 'libs/librdata/src/rdata.h':
|
||||
rdata_error_t rdata_end_table(rdata_writer_t *writer, int32_t row_count, const char *datalabel);
|
||||
rdata_error_t rdata_end_file(rdata_writer_t *writer);
|
||||
|
||||
-cdef extern from 'libs/librdata/src/rdata_io_unistd.h':
|
||||
+cdef extern from '<rdata_io_unistd.h>':
|
||||
cdef struct rdata_unistd_io_ctx_t 'rdata_unistd_io_ctx_s':
|
||||
int fd
|
||||
|
||||
23
math/py-pyreadr/files/patch-setup.py
Normal file
23
math/py-pyreadr/files/patch-setup.py
Normal file
@ -0,0 +1,23 @@
|
||||
--- setup.py.orig 2021-06-07 06:47:51 UTC
|
||||
+++ setup.py
|
||||
@@ -13,7 +13,6 @@ from setuptools import setup, Extension
|
||||
from Cython.Build import cythonize
|
||||
|
||||
librdata_source_files = []
|
||||
-librdata_source_files += glob.glob('pyreadr/libs/librdata/src/*.c')
|
||||
librdata_source_files += ['pyreadr/librdata.pyx']
|
||||
|
||||
library_dirs = []
|
||||
@@ -52,10 +51,11 @@ elif platform.system() == 'Windows':
|
||||
libraries.append('bz2')
|
||||
libraries.append('lzma')
|
||||
|
||||
-elif platform.system() == 'Linux':
|
||||
+elif platform.system() == 'FreeBSD' or platform.system() == 'Linux':
|
||||
libraries.append('z')
|
||||
libraries.append('bz2')
|
||||
libraries.append('lzma')
|
||||
+ libraries.append('rdata')
|
||||
#extra_compile_args.append("--std=gnu99")
|
||||
else:
|
||||
raise RuntimeError('Unsupported OS')
|
||||
5
math/py-pyreadr/pkg-descr
Normal file
5
math/py-pyreadr/pkg-descr
Normal file
@ -0,0 +1,5 @@
|
||||
pyreadr is a python package to read and write R RData and Rds files into/from
|
||||
pandas dataframes. It does not need to have R or other external dependencies
|
||||
installed.
|
||||
|
||||
WWW: https://github.com/ofajardo/pyreadr
|
||||
Loading…
Reference in New Issue
Block a user