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biology/viennarna: update 2.6.3 → 2.6.4

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This commit is contained in:
Yuri Victorovich 2023-11-03 15:01:48 -07:00
parent 1c775798a2
commit 3a75bcff89
2 changed files with 14 additions and 9 deletions
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17
biology/viennarna/Makefile
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@ -1,5 +1,5 @@
PORTNAME= viennarna
DISTVERSION= 2.6.3
DISTVERSION= 2.6.4
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/
DISTNAME= ViennaRNA-${DISTVERSION}
@ -13,23 +13,28 @@ LICENSE_NAME= Vienna RNA License
LICENSE_FILE= ${WRKSRC}/COPYING
LICENSE_PERMS= auto-accept dist-mirror pkg-mirror
BROKEN_FreeBSD_14= fails to compile: no member named 'bind2nd' in namespace 'std'
#BROKEN_FreeBSD_14= fails to compile: no member named 'bind2nd' in namespace 'std'
BUILD_DEPENDS= bash:shells/bash \
lapacke>0:math/lapacke \
libgd>0:graphics/gd # for the static lib
BUILD_DEPENDS+= swig:devel/swig \
xxd:sysutils/xxd
LIB_DEPENDS= libgmp.so:math/gmp \
libgsl.so:math/gsl \
liblapack.so:math/lapack \
libmpfr.so:math/mpfr \
libopenblas.so:math/openblas
libmpfr.so:math/mpfr
USES= autoreconf compiler:c++11-lang fortran gmake libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure
USE_XORG= x11 xext # only for build
USES= autoreconf bison compiler:c++17-lang fortran gmake \
libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure
USE_XORG= ice x11 xext # only for build
GNU_CONFIGURE= yes
CONFIGURE_SHELL= ${PREFIX}/bin/bash
CONFIGURE_ARGS= --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl
CXXFLAGS+= -Dregister= # workaround for https://github.com/ViennaRNA/ViennaRNA/issues/214
TEST_TARGET= check
CONFLICTS_INSTALL= g2 # include/g2.h

6
biology/viennarna/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1690013390
SHA256 (ViennaRNA-2.6.3.tar.gz) = 07b5c3abcda3076f3dd2041a67df5aa25d21468ae41f18eaecf3aaa7751ab495
SIZE (ViennaRNA-2.6.3.tar.gz) = 66320039
TIMESTAMP = 1699041043
SHA256 (ViennaRNA-2.6.4.tar.gz) = d1259ce5809601a12b0dc9b724ea2c55806fece80d8d83ad417ea8a2dd574982
SIZE (ViennaRNA-2.6.4.tar.gz) = 69749819