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Maintainer update of biology/tinker port to version 4.0.
PR: 52498 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
This commit is contained in:
Maho Nakata
parent
43801110c6
commit
3c2eb776a2
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=85168
@ -6,8 +6,7 @@
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#
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PORTNAME= tinker
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PORTVERSION= 3.9
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PORTREVISION= 1
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PORTVERSION= 4.0
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CATEGORIES= biology
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MASTER_SITES= ftp://dasher.wustl.edu/pub/
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DISTNAME= ${PORTNAME}
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@ -25,11 +24,6 @@ INSTALL_TARGET= rename
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RESTRICTED= author requests no distribution except from his FTP site
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pre-fetch:
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@${ECHO_MSG} ""
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@${ECHO_MSG} If you get a CHECKSUM mismatch, try doing a \'make distclean\' first.
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@${ECHO_MSG} ""
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.include <bsd.port.pre.mk>
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.if defined(WITH_VIEWER)
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@ -1,5 +1,5 @@
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--- ../make/Makefile.orig Tue Nov 13 10:16:27 2001
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+++ ../make/Makefile Mon Dec 31 15:33:40 2001
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--- ../make/Makefile.orig Wed Nov 14 01:16:27 2001
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+++ ../make/Makefile Sat Jul 19 12:22:51 2003
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@@ -9,8 +9,8 @@
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##
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## 1. make all Build all the TINKER executables
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11
biology/tinker/files/patch-openend.f
Normal file
11
biology/tinker/files/patch-openend.f
Normal file
@ -0,0 +1,11 @@
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--- openend.f.orig Tue Dec 18 12:28:54 2001
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+++ openend.f Sat Jul 19 12:30:57 2003
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@@ -33,7 +33,7 @@
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c
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c common extension supported by many Fortran 77 compilers
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c
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-c open (unit=iunit,file=name,status='old',access='append')
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+ open (unit=iunit,file=name,status='old',access='append')
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c
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c some Fortran 77 compilers open files for append by default
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c
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@ -13,8 +13,6 @@ bin/intedit
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bin/intxyz
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bin/minimize
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bin/minirot
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bin/minrigid
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bin/monte
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bin/newton
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bin/newtrot
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bin/nucleic
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@ -45,6 +43,8 @@ bin/timerot
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bin/vibrate
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bin/vibrot
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bin/xtalfit
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bin/vibrot
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bin/xtalfit
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bin/xtalmin
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bin/xyzedit
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bin/xyzint
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@ -61,6 +61,8 @@ bin/xyzsybyl
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%%PORTDOCS%%share/doc/tinker/license.pdf
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%%PORTDOCS%%share/doc/tinker/license.ps
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%%PORTDOCS%%share/doc/tinker/license.txt
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%%PORTDOCS%%share/doc/tinker/logo-bind.pdf
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%%PORTDOCS%%share/doc/tinker/logo-bind.ps.gz
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%%PORTDOCS%%share/doc/tinker/logo.pdf
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%%PORTDOCS%%share/doc/tinker/logo.ps.gz
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%%PORTDOCS%%share/doc/tinker/release-3.2
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@ -68,6 +70,7 @@ bin/xyzsybyl
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%%PORTDOCS%%share/doc/tinker/release-3.7
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%%PORTDOCS%%share/doc/tinker/release-3.8
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%%PORTDOCS%%share/doc/tinker/release-3.9
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%%PORTDOCS%%share/doc/tinker/release-4.0
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%%PORTDOCS%%share/doc/tinker/summary.pdf
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%%PORTDOCS%%share/doc/tinker/summary.ps
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%%PORTDOCS%%share/doc/tinker/summary.txt
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@ -144,15 +147,21 @@ bin/xyzsybyl
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%%PORTDOCS%%share/tinker/bench/results-3.7
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%%PORTDOCS%%share/tinker/bench/results-3.8
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%%PORTDOCS%%share/tinker/bench/results-3.9
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%%PORTDOCS%%share/tinker/bench/results-4.0
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share/tinker/params/README
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share/tinker/params/amber.prm
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share/tinker/params/charmm.prm
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share/tinker/params/amber94.prm
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share/tinker/params/amber96.prm
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share/tinker/params/amber98.prm
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share/tinker/params/amoeba.prm
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share/tinker/params/charmm19.prm
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share/tinker/params/charmm27.prm
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share/tinker/params/dudek.prm
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share/tinker/params/hoch.prm
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share/tinker/params/mm2.prm
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share/tinker/params/mm3.prm
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share/tinker/params/mm3pro.prm
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share/tinker/params/opls.prm
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share/tinker/params/oplsaa.prm
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share/tinker/params/oplsua.prm
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share/tinker/params/smooth.prm
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share/tinker/params/smoothaa.prm
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share/tinker/params/water.prm
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@ -162,6 +171,8 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/ala20.xyz
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%%PORTDOCS%%share/tinker/test/alkane.key
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%%PORTDOCS%%share/tinker/test/alkane.xyz
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%%PORTDOCS%%share/tinker/test/amoeba.key
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%%PORTDOCS%%share/tinker/test/amoeba.xyz
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%%PORTDOCS%%share/tinker/test/arach.int
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%%PORTDOCS%%share/tinker/test/arach.key
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%%PORTDOCS%%share/tinker/test/arach.xyz
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@ -227,7 +238,6 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/crambin.key
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%%PORTDOCS%%share/tinker/test/crambin.pdb
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%%PORTDOCS%%share/tinker/test/crambin.seq
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%%PORTDOCS%%share/tinker/test/crambin.super
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%%PORTDOCS%%share/tinker/test/crambin.xyz
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%%PORTDOCS%%share/tinker/test/crambinx.key
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%%PORTDOCS%%share/tinker/test/crambinx.ray
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@ -253,9 +263,6 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/diene.xyz
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%%PORTDOCS%%share/tinker/test/dimethane.key
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%%PORTDOCS%%share/tinker/test/dimethane.xyz
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%%PORTDOCS%%share/tinker/test/diwater.key
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%%PORTDOCS%%share/tinker/test/diwater.lin
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%%PORTDOCS%%share/tinker/test/diwater.xyz
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%%PORTDOCS%%share/tinker/test/enkephalin.int
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%%PORTDOCS%%share/tinker/test/enkephalin.key
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%%PORTDOCS%%share/tinker/test/enkephalin.make
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@ -290,6 +297,9 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/furan.xyz
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%%PORTDOCS%%share/tinker/test/glucose.key
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%%PORTDOCS%%share/tinker/test/glucose.xyz
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%%PORTDOCS%%share/tinker/test/glycerol.dyn
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%%PORTDOCS%%share/tinker/test/glycerol.key
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%%PORTDOCS%%share/tinker/test/glycerol.xyz
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%%PORTDOCS%%share/tinker/test/graphite.key
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%%PORTDOCS%%share/tinker/test/graphite.xyz
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%%PORTDOCS%%share/tinker/test/helix.dyn
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@ -304,7 +314,6 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/hexanes.key
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%%PORTDOCS%%share/tinker/test/hexanes.run
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%%PORTDOCS%%share/tinker/test/hexanes.xyz
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%%PORTDOCS%%share/tinker/test/hexanex.xyz
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%%PORTDOCS%%share/tinker/test/imidazole.int
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%%PORTDOCS%%share/tinker/test/imidazole.key
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%%PORTDOCS%%share/tinker/test/imidazole.xyz
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@ -362,6 +371,10 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/peptide.xyz
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%%PORTDOCS%%share/tinker/test/phenanth.key
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%%PORTDOCS%%share/tinker/test/phenanth.xyz
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%%PORTDOCS%%share/tinker/test/photo.key
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%%PORTDOCS%%share/tinker/test/photo.pdb
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%%PORTDOCS%%share/tinker/test/photo.seq
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%%PORTDOCS%%share/tinker/test/photo.xyz
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%%PORTDOCS%%share/tinker/test/pol3.key
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%%PORTDOCS%%share/tinker/test/pol3.xyz
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%%PORTDOCS%%share/tinker/test/propane.key
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@ -402,6 +415,10 @@ share/tinker/rasmol/rasmol.hlp
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%%PORTDOCS%%share/tinker/test/tip4p.xyz
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%%PORTDOCS%%share/tinker/test/tip5p.key
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%%PORTDOCS%%share/tinker/test/tip5p.xyz
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%%PORTDOCS%%share/tinker/test/trpcage.key
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%%PORTDOCS%%share/tinker/test/trpcage.pdb
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%%PORTDOCS%%share/tinker/test/trpcage.seq
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%%PORTDOCS%%share/tinker/test/trpcage.xyz
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%%PORTDOCS%%share/tinker/test/water.int
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%%PORTDOCS%%share/tinker/test/water.key
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%%PORTDOCS%%share/tinker/test/water.xyz
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@ -428,7 +445,7 @@ share/tinker/tinker.txt
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%%PORTDOCS%%@dirrm share/doc/tinker
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%%PORTDOCS%%@dirrm share/examples/tinker
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%%PORTDOCS%%@dirrm share/tinker/bench
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@dirrm share/tinker/params
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@dirrm share/tinker/rasmol
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@dirrm share/tinker/params
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%%PORTDOCS%%@dirrm share/tinker/test
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@dirrm share/tinker
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