mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-21 00:25:50 +00:00
Update to v2.0.0 and patch for clang.
PR: ports/183454 Submitted by: Jason Bacon <jwbacon (at) tds.net> (maintainer)
This commit is contained in:
Thierry Thomas
parent
f7dadc0993
commit
3daa195fda
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=341786
@ -1,28 +1,27 @@
|
||||
# Created by: Jason Bacon <bacon@smithers.neuro.mcw.edu>
|
||||
# Created by: Jason W. Bacon <jwbacon@tds.net>
|
||||
# $FreeBSD$
|
||||
|
||||
PORTNAME= nifticlib
|
||||
PORTVERSION= 1.1.0
|
||||
PORTVERSION= 2.0.0
|
||||
CATEGORIES= science graphics
|
||||
MASTER_SITES= SF/niftilib/${PORTNAME}/${PORTNAME}-${PORTVERSION}
|
||||
MASTER_SITES= SF/niftilib/nifticlib/nifticlib_2_0_0
|
||||
|
||||
MAINTAINER= jwbacon@tds.net
|
||||
COMMENT= Neuroimaging Informatics Technology Initiative data format
|
||||
|
||||
# LICENSE= public domain
|
||||
|
||||
USES= gmake
|
||||
MAKE_JOBS_UNSAFE=yes
|
||||
|
||||
MAN1= nifticlib.1
|
||||
|
||||
NO_STAGE= yes
|
||||
post-patch:
|
||||
@${REINPLACE_CMD} -e 's/include depend.mk/-&/' \
|
||||
${WRKSRC}/fsliolib/Makefile ${WRKSRC}/nifticdf/Makefile \
|
||||
${WRKSRC}/niftilib/Makefile ${WRKSRC}/znzlib/Makefile
|
||||
# AFNI currently has nifti embedded in the distfile and installs the
|
||||
# nifti bins by itself.
|
||||
CONFLICTS= afni-[0-9]* dbh-[0-9]*
|
||||
|
||||
do-install:
|
||||
${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${PREFIX}/bin
|
||||
${INSTALL_DATA} ${WRKSRC}/lib/* ${PREFIX}/lib
|
||||
${INSTALL_DATA} ${WRKSRC}/include/* ${PREFIX}/include
|
||||
${INSTALL_MAN} ${FILESDIR}/nifticlib.1 ${MANPREFIX}/man/man1
|
||||
${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${STAGEDIR}${PREFIX}/bin
|
||||
${INSTALL_DATA} ${WRKSRC}/lib/*.a ${STAGEDIR}${PREFIX}/lib
|
||||
${INSTALL_DATA} ${WRKSRC}/include/*.h ${STAGEDIR}${PREFIX}/include
|
||||
${INSTALL_MAN} ${FILESDIR}/nifticlib.1 ${STAGEDIR}${PREFIX}/man/man1
|
||||
|
||||
.include <bsd.port.mk>
|
||||
|
||||
@ -1,2 +1,2 @@
|
||||
SHA256 (nifticlib-1.1.0.tar.gz) = 8997ade09c3b86806cccaf4e030f278dc91706ffafdda6043dca1c2f126cd018
|
||||
SIZE (nifticlib-1.1.0.tar.gz) = 251180
|
||||
SHA256 (nifticlib-2.0.0.tar.gz) = a3e988e6a32ec57833056f6b09f940c69e79829028da121ff2c5c6f7f94a7f88
|
||||
SIZE (nifticlib-2.0.0.tar.gz) = 258491
|
||||
|
||||
@ -1,106 +1,49 @@
|
||||
--- Makefile.orig 2013-07-28 02:33:14.000000000 +0800
|
||||
+++ Makefile 2013-07-28 02:38:08.000000000 +0800
|
||||
@@ -115,34 +115,33 @@
|
||||
--- Makefile.orig 2010-07-20 12:18:58.000000000 -0500
|
||||
+++ Makefile 2013-10-29 15:55:12.000000000 -0500
|
||||
@@ -17,21 +17,21 @@
|
||||
|
||||
|
||||
znz:
|
||||
- echo "arch is $(ARCH)"
|
||||
- (cd $(ZNZ); $(MAKE) depend; $(MAKE) lib;)
|
||||
+ $(MAKE) -C $(ZNZ) depend lib
|
||||
@echo " ----------- $(ZNZ) build completed."
|
||||
@echo ""
|
||||
## Compiler defines
|
||||
-cc = gcc
|
||||
-CC = gcc
|
||||
-AR = ar
|
||||
-RANLIB = ranlib
|
||||
-DEPENDFLAGS = -MM
|
||||
-GNU_ANSI_FLAGS = -Wall -ansi -pedantic
|
||||
-ANSI_FLAGS = ${GNU_ANSI_FLAGS}
|
||||
-CFLAGS = $(ANSI_FLAGS)
|
||||
+cc ?= gcc
|
||||
+CC ?= gcc
|
||||
+AR ?= ar
|
||||
+RANLIB ?= ranlib
|
||||
+DEPENDFLAGS ?= -MM
|
||||
+GNU_ANSI_FLAGS ?= -Wall -ansi -pedantic
|
||||
+ANSI_FLAGS += ${GNU_ANSI_FLAGS}
|
||||
+CFLAGS += $(ANSI_FLAGS)
|
||||
|
||||
nifti: znz
|
||||
- (cd $(NIFTI); $(MAKE) depend; $(MAKE) lib;)
|
||||
+ $(MAKE) -C $(NIFTI) depend lib
|
||||
@echo " ----------- $(NIFTI) build completed."
|
||||
@echo ""
|
||||
|
||||
nifticdf:nifti
|
||||
- (cd $(NIFTICDF); $(MAKE) depend; $(MAKE) lib;)
|
||||
+ $(MAKE) -C $(NIFTICDF) depend lib
|
||||
@echo " ----------- $(NIFTICDF) build completed."
|
||||
@echo ""
|
||||
|
||||
fslio: nifti
|
||||
- (cd $(FSLIO); $(MAKE) depend; $(MAKE) lib;)
|
||||
+ $(MAKE) -C $(FSLIO) depend lib
|
||||
@echo " ---------- $(FSLIO) build completed."
|
||||
@echo ""
|
||||
|
||||
example:nifti
|
||||
- (cd $(EXAMPLES); $(MAKE) all;)
|
||||
+ $(MAKE) -C $(EXAMPLES) all
|
||||
@echo Example programs built.
|
||||
@echo ""
|
||||
## Command defines
|
||||
## gmake does not work on MacOSX or some versions of linux MAKE = gmake
|
||||
-RM = rm
|
||||
-MV = mv
|
||||
-CP = cp
|
||||
-TAR = tar
|
||||
+RM ?= rm
|
||||
+MV ?= mv
|
||||
+CP ?= cp
|
||||
+TAR ?= tar
|
||||
|
||||
|
||||
utils: nifti nifticdf
|
||||
- (cd $(UTILS); $(MAKE) all;)
|
||||
+ $(MAKE) -C $(UTILS) all
|
||||
@echo Utility programs built.
|
||||
@echo ""
|
||||
## Installation
|
||||
@@ -41,9 +41,9 @@
|
||||
|
||||
@@ -152,7 +151,7 @@
|
||||
@echo ""
|
||||
|
||||
regress_data:
|
||||
- (cd $(TESTING); $(MAKE) regress_data 'RM=$(RM)' 'TAR=$(TAR)'; )
|
||||
+ $(MAKE) -C $(TESTING) regress_data 'RM=$(RM)' 'TAR=$(TAR)'
|
||||
@echo ""
|
||||
@echo Regression testing data installed.
|
||||
@echo See Testing/README_regress for details.
|
||||
@@ -167,25 +166,25 @@
|
||||
$(INSTALL_LIB_DIR):
|
||||
mkdir -p $@
|
||||
## Zlib defines
|
||||
-ZLIB_INC = -I/usr/include
|
||||
-ZLIB_PATH = -L/usr/lib
|
||||
-ZLIB_LIBS = $(ZLIB_PATH) -lm -lz
|
||||
+ZLIB_INC ?= -I/usr/include
|
||||
+ZLIB_PATH ?= -L/usr/lib
|
||||
+ZLIB_LIBS ?= $(ZLIB_PATH) -lm -lz
|
||||
|
||||
-znz_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
+znz_install: znz $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
($(CP) $(ZNZ)/*.a $(INSTALL_LIB_DIR); $(CP) $(ZNZ)/*.h $(INSTALL_INC_DIR);)
|
||||
$(RANLIB) $(INSTALL_LIB_DIR)/*.a
|
||||
@echo " $(ZNZ) installed."
|
||||
@echo ""
|
||||
|
||||
-nifti_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
+nifti_install: nifti $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
($(CP) $(NIFTI)/*.a $(INSTALL_LIB_DIR); $(CP) $(NIFTI)/*.h $(INSTALL_INC_DIR);)
|
||||
$(RANLIB) $(INSTALL_LIB_DIR)/*.a
|
||||
@echo " $(NIFTI) installed."
|
||||
@echo ""
|
||||
|
||||
-nifticdf_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
+nifticdf_install: nifticdf $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
($(CP) $(NIFTICDF)/*.a $(INSTALL_LIB_DIR); $(CP) $(NIFTICDF)/*.h $(INSTALL_INC_DIR);)
|
||||
$(RANLIB) $(INSTALL_LIB_DIR)/*.a
|
||||
@echo " $(NIFTI) installed."
|
||||
@echo ""
|
||||
|
||||
-fslio_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
+fslio_install: fslio $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
|
||||
($(CP) $(FSLIO)/*.a $(INSTALL_LIB_DIR); $(CP) $(FSLIO)/*.h $(INSTALL_INC_DIR);)
|
||||
$(RANLIB) $(INSTALL_LIB_DIR)/*.a
|
||||
@echo " $(FSLIO) installed."
|
||||
@@ -212,19 +211,19 @@
|
||||
(cd $(FSLIO); $(RM) -f *.o *.a core; $(RM) -f depend.mk;)
|
||||
|
||||
examples_clean:
|
||||
- (cd $(EXAMPLES); $(MAKE) clean;)
|
||||
+ $(MAKE) -C $(EXAMPLES) clean
|
||||
|
||||
utils_clean:
|
||||
- (cd $(UTILS); $(MAKE) clean;)
|
||||
+ $(MAKE) -C $(UTILS) clean
|
||||
|
||||
doc_clean:
|
||||
($(RM) -fr docs/html;)
|
||||
|
||||
regress_clean:
|
||||
- (cd $(TESTING); $(MAKE) regress_clean; )
|
||||
+ $(MAKE) -C $(TESTING) regress_clean
|
||||
|
||||
regress_clean_all:
|
||||
- (cd $(TESTING); $(MAKE) regress_clean_all; )
|
||||
+ $(MAKE) -C $(TESTING) regress_clean_all
|
||||
|
||||
tar:
|
||||
(cd .. ; ln -s $(THIS_DIR) ${TARFILE_NAME} ; \
|
||||
##############################################################
|
||||
# platform specific redefines (to use, set ARCH appropriately)
|
||||
|
||||
8
science/nifticlib/files/patch-examples-Makefile
Normal file
8
science/nifticlib/files/patch-examples-Makefile
Normal file
@ -0,0 +1,8 @@
|
||||
--- examples/Makefile.orig 2013-10-29 15:56:43.000000000 -0500
|
||||
+++ examples/Makefile 2013-10-29 15:56:48.000000000 -0500
|
||||
@@ -1,4 +1,4 @@
|
||||
-CC = gcc
|
||||
+CC ?= gcc
|
||||
CFLAGS = -ansi -pedantic
|
||||
|
||||
FSLIO_INCS = -I../include
|
||||
10
science/nifticlib/files/patch-utils-Makefile
Normal file
10
science/nifticlib/files/patch-utils-Makefile
Normal file
@ -0,0 +1,10 @@
|
||||
--- utils/Makefile.orig 2007-05-17 15:18:44.000000000 -0500
|
||||
+++ utils/Makefile 2013-10-29 15:55:12.000000000 -0500
|
||||
@@ -1,5 +1,5 @@
|
||||
-CC = gcc
|
||||
-CFLAGS = -ansi -pedantic
|
||||
+CC ?= gcc
|
||||
+CFLAGS ?= -ansi -pedantic
|
||||
|
||||
FSLIO_INCS = -I../include
|
||||
NIFTI_INCS = -I../include
|
||||
@ -1,4 +1,4 @@
|
||||
NIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWG
|
||||
NIfTI-1 is an Analyze-style data format, proposed by the NIfTI DFWG
|
||||
as a short-term measure to facilitate inter-operation of functional MRI
|
||||
data analysis software packages.
|
||||
|
||||
|
||||
@ -1,13 +1,15 @@
|
||||
@comment Generated by sysutils/genplist
|
||||
bin/nifti1_test
|
||||
bin/nifti_stats
|
||||
bin/nifti_tool
|
||||
include/dbh.h
|
||||
include/fslio.h
|
||||
include/nifti1.h
|
||||
include/nifticdf.h
|
||||
include/nifti1_io.h
|
||||
include/nifticdf.h
|
||||
include/znzlib.h
|
||||
lib/libfslio.a
|
||||
lib/libnifticdf.a
|
||||
lib/libniftiio.a
|
||||
lib/libznz.a
|
||||
man/man1/nifticlib.1.gz
|
||||
|
||||
Loading…
Reference in New Issue
Block a user