mirror of
https://git.FreeBSD.org/ports.git
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- Update to version 2.2.0
- Update included EMBASSY package EMNU - Fix a long-standing bug in Makefile that would preclude PKGMESSAGE from being generated properly - Consider this an interim update merely to track the latest version - more work is required to activate the newly included "Jemboss" Java GUI interface
This commit is contained in:
Johann Visagie
parent
39ba379e3b
commit
443693b9ae
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=53296
@ -6,10 +6,9 @@
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#
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PORTNAME= emboss
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PORTVERSION= 2.0.1
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PORTVERSION= 2.2.0
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
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ftp://ftp.no.embnet.org/pub/EMBOSS/ \
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ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \
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ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
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DISTFILES= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
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@ -21,7 +20,7 @@ MAINTAINER= wjv@FreeBSD.org
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LIB_DEPENDS= gd.2:${PORTSDIR}/graphics/gd
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USE_GMAKE= yes
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USE_LIBTOOL= yes
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GNU_CONFIGURE= yes
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INSTALLS_SHLIB= yes
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USE_XLIB= yes
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USE_MOTIF= yes
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@ -38,7 +37,7 @@ SCRIPTS_ENV+= WRKDIRPREFIX="${WRKDIRPREFIX}" \
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WRKSRC= ${WRKDIR}/${PORTNAME:U}-${PORTVERSION}
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EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY
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EMNU_VERSION= 1.0.4
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EMNU_VERSION= 1.0.5
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HMMER_VERSION= 2.1.1
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MEME_VERSION= 2.3.1
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MSE_VERSION= 0.0.4
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@ -111,9 +110,9 @@ post-install:
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${CONFIG_FILE} > ${PREFIX}/etc/emboss.default.sample && \
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${CHOWN} ${SHAREOWN}:${SHAREGRP} \
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${PREFIX}/etc/emboss.default.sample
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.if !defined(BATCH)
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@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \
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pkg-message > ${PKGMESSAGE}
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.if !defined(BATCH)
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@ ${CAT} ${PKGMESSAGE}
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.endif
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@ -1,7 +1,7 @@
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MD5 (emboss/EMBOSS-2.0.1.tar.gz) = 7546441cc78be9054c4cdd5e24b97048
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MD5 (emboss/EMNU-1.0.4.tar.gz) = f24a5dcfe2cd7a4423f8dc8ed1946920
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MD5 (emboss/HMMER-2.1.1.tar.gz) = 01686894a1d5ca4b93555648e4e192bd
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MD5 (emboss/MEME-2.3.1.tar.gz) = 941921287a49a691d2a78b8726b5ac88
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MD5 (emboss/MSE-0.0.4.tar.gz) = 20661dce0e542b25d17bff86858f6cb2
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MD5 (emboss/PHYLIP-3.573c.tar.gz) = 55c91edc768003f83342f4c8e5b345e4
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MD5 (emboss/TOPO-0.1.tar.gz) = 416f5211bd9a7caee009c743e5a1a268
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MD5 (emboss/EMBOSS-2.2.0.tar.gz) = c6d755f98f558f9f98649c1d1cca44a6
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MD5 (emboss/EMNU-1.0.5.tar.gz) = 6ba42bfd8484b313f39ef81e03141f66
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MD5 (emboss/HMMER-2.1.1.tar.gz) = aff42ea8ced9c049f2cc4f84a10efd21
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MD5 (emboss/MEME-2.3.1.tar.gz) = 92302d22ccb94f9e77c1bb2ca35c0f9c
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MD5 (emboss/MSE-0.0.4.tar.gz) = fdfdb7f4d92f67323b14b7030a1135c9
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MD5 (emboss/PHYLIP-3.573c.tar.gz) = 5fa81a3cfb4f502c627a30428d49a084
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MD5 (emboss/TOPO-0.1.tar.gz) = 96fced0b0979157e344fd9b08dc2aa64
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@ -88,9 +88,11 @@
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%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd
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bin/abiview
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bin/acdc
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bin/alignwrap
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bin/antigenic
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bin/backtranseq
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bin/banana
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bin/biosed
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bin/btwisted
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bin/cai
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bin/chaos
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@ -115,6 +117,7 @@ bin/dbiflat
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bin/dbigcg
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bin/degapseq
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bin/descseq
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bin/dichet
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bin/diffseq
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bin/digest
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bin/distmat
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@ -132,6 +135,7 @@ bin/entret
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bin/equicktandem
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bin/est2genome
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bin/etandem
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bin/extractfeat
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bin/extractseq
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bin/findkm
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bin/freak
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@ -148,6 +152,7 @@ bin/infoalign
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bin/infoseq
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bin/isochore
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bin/lindna
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bin/listor
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bin/marscan
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bin/maskfeat
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bin/maskseq
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@ -155,6 +160,7 @@ bin/matcher
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bin/megamerger
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bin/merger
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bin/msbar
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bin/mwfilter
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bin/needle
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bin/newcpgreport
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bin/newcpgseek
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@ -182,7 +188,7 @@ bin/polydot
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bin/preg
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bin/prettyplot
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bin/prettyseq
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bin/prima
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bin/primer3
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bin/primersearch
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bin/printsextract
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bin/profit
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@ -190,6 +196,7 @@ bin/prophecy
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bin/prophet
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bin/prosextract
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bin/pscan
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bin/psiblasts
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bin/rebaseextract
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bin/recoder
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bin/redata
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@ -197,6 +204,7 @@ bin/remap
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bin/restover
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bin/restrict
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bin/revseq
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bin/runJemboss.csh
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bin/scopalign
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bin/scope
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bin/seealso
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@ -214,6 +222,7 @@ bin/showseq
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bin/shuffleseq
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bin/sigcleave
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bin/siggen
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bin/sigscan
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bin/silent
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bin/splitter
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bin/stretcher
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@ -227,6 +236,7 @@ bin/tfm
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bin/tfscan
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bin/tmap
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bin/transeq
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bin/trimest
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bin/trimseq
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bin/vectorstrip
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bin/water
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@ -236,24 +246,30 @@ bin/wordmatch
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bin/wossname
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etc/emboss.default.sample
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lib/libajax.a
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lib/libajax.la
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lib/libajax.so
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lib/libajax.so.1
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lib/libajaxg.a
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lib/libajaxg.la
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lib/libajaxg.so
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lib/libajaxg.so.1
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lib/libnucleus.a
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lib/libnucleus.la
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lib/libnucleus.so
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lib/libnucleus.so.1
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lib/libplplot.a
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lib/libplplot.la
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lib/libplplot.so
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lib/libplplot.so.4
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lib/libplplot.so.5
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share/EMBOSS/acd/abiview.acd
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share/EMBOSS/acd/ajbad.acd
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share/EMBOSS/acd/ajfeatest.acd
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share/EMBOSS/acd/ajtest.acd
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share/EMBOSS/acd/alignwrap.acd
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share/EMBOSS/acd/antigenic.acd
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share/EMBOSS/acd/backtranseq.acd
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share/EMBOSS/acd/banana.acd
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share/EMBOSS/acd/biosed.acd
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share/EMBOSS/acd/btwisted.acd
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share/EMBOSS/acd/cai.acd
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share/EMBOSS/acd/chaos.acd
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@ -267,6 +283,7 @@ share/EMBOSS/acd/codes.english
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share/EMBOSS/acd/complex.acd
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share/EMBOSS/acd/compseq.acd
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share/EMBOSS/acd/cons.acd
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share/EMBOSS/acd/contacts.acd
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share/EMBOSS/acd/corbatest.acd
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share/EMBOSS/acd/cpgplot.acd
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share/EMBOSS/acd/cpgreport.acd
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@ -279,12 +296,15 @@ share/EMBOSS/acd/dbifasta.acd
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share/EMBOSS/acd/dbiflat.acd
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share/EMBOSS/acd/dbigcg.acd
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share/EMBOSS/acd/degapseq.acd
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share/EMBOSS/acd/demoalign.acd
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share/EMBOSS/acd/demofeatures.acd
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share/EMBOSS/acd/demolist.acd
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share/EMBOSS/acd/demoreport.acd
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share/EMBOSS/acd/demosequence.acd
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share/EMBOSS/acd/demostring.acd
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share/EMBOSS/acd/demotable.acd
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share/EMBOSS/acd/descseq.acd
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share/EMBOSS/acd/dichet.acd
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share/EMBOSS/acd/diffseq.acd
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share/EMBOSS/acd/digest.acd
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share/EMBOSS/acd/distmat.acd
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@ -303,6 +323,7 @@ share/EMBOSS/acd/entret.acd
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share/EMBOSS/acd/equicktandem.acd
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share/EMBOSS/acd/est2genome.acd
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share/EMBOSS/acd/etandem.acd
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share/EMBOSS/acd/extractfeat.acd
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share/EMBOSS/acd/extractseq.acd
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share/EMBOSS/acd/findkm.acd
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share/EMBOSS/acd/freak.acd
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@ -320,6 +341,7 @@ share/EMBOSS/acd/infoalign.acd
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share/EMBOSS/acd/infoseq.acd
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share/EMBOSS/acd/isochore.acd
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share/EMBOSS/acd/lindna.acd
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share/EMBOSS/acd/listor.acd
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share/EMBOSS/acd/marscan.acd
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share/EMBOSS/acd/maskfeat.acd
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share/EMBOSS/acd/maskseq.acd
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@ -327,6 +349,7 @@ share/EMBOSS/acd/matcher.acd
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share/EMBOSS/acd/megamerger.acd
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share/EMBOSS/acd/merger.acd
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share/EMBOSS/acd/msbar.acd
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share/EMBOSS/acd/mwfilter.acd
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share/EMBOSS/acd/needle.acd
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share/EMBOSS/acd/newcpgreport.acd
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share/EMBOSS/acd/newcpgseek.acd
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@ -356,6 +379,8 @@ share/EMBOSS/acd/preg.acd
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share/EMBOSS/acd/prettyplot.acd
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share/EMBOSS/acd/prettyseq.acd
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share/EMBOSS/acd/prima.acd
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share/EMBOSS/acd/primer3.acd
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share/EMBOSS/acd/primers.acd
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share/EMBOSS/acd/primersearch.acd
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share/EMBOSS/acd/printsextract.acd
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share/EMBOSS/acd/profit.acd
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@ -380,8 +405,8 @@ share/EMBOSS/acd/seqret.acd
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share/EMBOSS/acd/seqretall.acd
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share/EMBOSS/acd/seqretallfeat.acd
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share/EMBOSS/acd/seqretset.acd
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share/EMBOSS/acd/seqretsingle.acd
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share/EMBOSS/acd/seqretsplit.acd
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share/EMBOSS/acd/seqrettype.acd
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share/EMBOSS/acd/showalign.acd
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share/EMBOSS/acd/showdb.acd
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share/EMBOSS/acd/showfeat.acd
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@ -396,6 +421,7 @@ share/EMBOSS/acd/splitter.acd
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share/EMBOSS/acd/stretcher.acd
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share/EMBOSS/acd/stssearch.acd
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share/EMBOSS/acd/supermatcher.acd
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share/EMBOSS/acd/swissparse.acd
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share/EMBOSS/acd/syco.acd
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share/EMBOSS/acd/testplot.acd
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share/EMBOSS/acd/textsearch.acd
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@ -405,6 +431,7 @@ share/EMBOSS/acd/tfscan.acd
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share/EMBOSS/acd/tmap.acd
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share/EMBOSS/acd/transeq.acd
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share/EMBOSS/acd/treetypedisplay.acd
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share/EMBOSS/acd/trimest.acd
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share/EMBOSS/acd/trimseq.acd
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share/EMBOSS/acd/vectorstrip.acd
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share/EMBOSS/acd/water.acd
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@ -694,8 +721,243 @@ share/EMBOSS/data/PROSITE/dummyfile
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share/EMBOSS/data/REBASE/dummyfile
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share/EMBOSS/data/embossre.equ
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share/EMBOSS/emboss.default.template
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share/EMBOSS/jemboss/LICENSE
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share/EMBOSS/jemboss/api/allclasses-frame.html
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share/EMBOSS/jemboss/api/deprecated-list.html
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share/EMBOSS/jemboss/api/getClasses.pl
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share/EMBOSS/jemboss/api/help-doc.html
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share/EMBOSS/jemboss/api/index-all.html
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share/EMBOSS/jemboss/api/index.html
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share/EMBOSS/jemboss/api/makeDocs.csh
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share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.winExit.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossLogo.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossParams.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/BuildProgramMenu.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ResultsMenuBar.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SetUpMenuBar.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowResultSet.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowSavedResults.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SwingWorker.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/DragTree.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.PopupListener.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileNode.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileSaving.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/BuildJembossForm.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/ListFilePanel.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SectionPanel.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetInFileCard.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetOutFileCard.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.DecimalNumberDocument.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.WholeNumberDocument.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldSink.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/myComboPopup.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/myComboPopup.myComboUI.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/FileChooser.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Database.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.HorizontalMenu.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Splash.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdFunResolve.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdVarResolve.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Ajax.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Dependent.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/ParseAcd.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/Application.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationFields.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationParam.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/JembossProcess.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ListFile.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ResultList.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/RunEmbossApplication.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/AuthPopup.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/CallAjax.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/GetWossname.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossRun.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossSoapException.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PendingResults.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PrivateRequest.html
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share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/ResListView.html
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share/EMBOSS/jemboss/api/overview-tree.html
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
@ -742,6 +1005,7 @@ share/EMBOSS/test/data/prot.nbrf
|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
@ -816,6 +1080,7 @@ share/doc/EMBOSS/manuals/emboss_qg.ps
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
@ -826,6 +1091,7 @@ share/doc/EMBOSS/programs/html/antigenic.html
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
@ -847,6 +1113,7 @@ share/doc/EMBOSS/programs/html/cpgplot.html
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
@ -911,6 +1178,7 @@ share/doc/EMBOSS/programs/html/erestml.html
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
@ -938,6 +1206,7 @@ share/doc/EMBOSS/programs/html/isochore0.gif
|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
share/doc/EMBOSS/programs/html/newcpgreport.html
|
||||
@ -1003,6 +1273,7 @@ share/doc/EMBOSS/programs/html/prettyplot3.gif
|
||||
share/doc/EMBOSS/programs/html/prettyplot4.gif
|
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share/doc/EMBOSS/programs/html/prettyseq.html
|
||||
share/doc/EMBOSS/programs/html/prima.html
|
||||
share/doc/EMBOSS/programs/html/primer3.html
|
||||
share/doc/EMBOSS/programs/html/primersearch.html
|
||||
share/doc/EMBOSS/programs/html/printsextract.html
|
||||
share/doc/EMBOSS/programs/html/profit.html
|
||||
@ -1067,6 +1338,7 @@ share/doc/EMBOSS/programs/html/tmap0.gif
|
||||
share/doc/EMBOSS/programs/html/topo.gif
|
||||
share/doc/EMBOSS/programs/html/topo.html
|
||||
share/doc/EMBOSS/programs/html/transeq.html
|
||||
share/doc/EMBOSS/programs/html/trimest.html
|
||||
share/doc/EMBOSS/programs/html/trimseq.html
|
||||
share/doc/EMBOSS/programs/html/utils_database_creation_group.html
|
||||
share/doc/EMBOSS/programs/html/utils_database_indexing_group.html
|
||||
@ -1080,9 +1352,11 @@ share/doc/EMBOSS/programs/html/wordmatch.html
|
||||
share/doc/EMBOSS/programs/html/wossname.html
|
||||
share/doc/EMBOSS/programs/text/SITE-DIRECTED.txt
|
||||
share/doc/EMBOSS/programs/text/abiview.txt
|
||||
share/doc/EMBOSS/programs/text/ajtest.txt
|
||||
share/doc/EMBOSS/programs/text/antigenic.txt
|
||||
share/doc/EMBOSS/programs/text/backtranseq.txt
|
||||
share/doc/EMBOSS/programs/text/banana.txt
|
||||
share/doc/EMBOSS/programs/text/biosed.txt
|
||||
share/doc/EMBOSS/programs/text/btwisted.txt
|
||||
share/doc/EMBOSS/programs/text/cai.txt
|
||||
share/doc/EMBOSS/programs/text/chaos.txt
|
||||
@ -1103,6 +1377,7 @@ share/doc/EMBOSS/programs/text/contrast.txt
|
||||
share/doc/EMBOSS/programs/text/cpgplot.txt
|
||||
share/doc/EMBOSS/programs/text/cpgreport.txt
|
||||
share/doc/EMBOSS/programs/text/cusp.txt
|
||||
share/doc/EMBOSS/programs/text/cutgextract.txt
|
||||
share/doc/EMBOSS/programs/text/cutseq.txt
|
||||
share/doc/EMBOSS/programs/text/dan.txt
|
||||
share/doc/EMBOSS/programs/text/dbiblast.txt
|
||||
@ -1161,6 +1436,7 @@ share/doc/EMBOSS/programs/text/erestml.txt
|
||||
share/doc/EMBOSS/programs/text/eseqboot.txt
|
||||
share/doc/EMBOSS/programs/text/est2genome.txt
|
||||
share/doc/EMBOSS/programs/text/etandem.txt
|
||||
share/doc/EMBOSS/programs/text/extractfeat.txt
|
||||
share/doc/EMBOSS/programs/text/extractseq.txt
|
||||
share/doc/EMBOSS/programs/text/factor.txt
|
||||
share/doc/EMBOSS/programs/text/findkm.txt
|
||||
@ -1181,6 +1457,7 @@ share/doc/EMBOSS/programs/text/infoseq.txt
|
||||
share/doc/EMBOSS/programs/text/isochore.txt
|
||||
share/doc/EMBOSS/programs/text/kitsch.txt
|
||||
share/doc/EMBOSS/programs/text/lindna.txt
|
||||
share/doc/EMBOSS/programs/text/listor.txt
|
||||
share/doc/EMBOSS/programs/text/marscan.txt
|
||||
share/doc/EMBOSS/programs/text/maskfeat.txt
|
||||
share/doc/EMBOSS/programs/text/maskseq.txt
|
||||
@ -1190,6 +1467,7 @@ share/doc/EMBOSS/programs/text/merger.txt
|
||||
share/doc/EMBOSS/programs/text/mix.txt
|
||||
share/doc/EMBOSS/programs/text/msbar.txt
|
||||
share/doc/EMBOSS/programs/text/mse.txt
|
||||
share/doc/EMBOSS/programs/text/mwfilter.txt
|
||||
share/doc/EMBOSS/programs/text/needle.txt
|
||||
share/doc/EMBOSS/programs/text/neighbor.txt
|
||||
share/doc/EMBOSS/programs/text/newcpgreport.txt
|
||||
@ -1220,6 +1498,7 @@ share/doc/EMBOSS/programs/text/preg.txt
|
||||
share/doc/EMBOSS/programs/text/prettyplot.txt
|
||||
share/doc/EMBOSS/programs/text/prettyseq.txt
|
||||
share/doc/EMBOSS/programs/text/prima.txt
|
||||
share/doc/EMBOSS/programs/text/primer3.txt
|
||||
share/doc/EMBOSS/programs/text/primersearch.txt
|
||||
share/doc/EMBOSS/programs/text/printsextract.txt
|
||||
share/doc/EMBOSS/programs/text/profit.txt
|
||||
@ -1272,6 +1551,7 @@ share/doc/EMBOSS/programs/text/tfscan.txt
|
||||
share/doc/EMBOSS/programs/text/tmap.txt
|
||||
share/doc/EMBOSS/programs/text/topo.txt
|
||||
share/doc/EMBOSS/programs/text/transeq.txt
|
||||
share/doc/EMBOSS/programs/text/trimest.txt
|
||||
share/doc/EMBOSS/programs/text/trimseq.txt
|
||||
share/doc/EMBOSS/programs/text/vectorstrip.txt
|
||||
share/doc/EMBOSS/programs/text/water.txt
|
||||
@ -1303,6 +1583,47 @@ share/doc/EMBOSS/tutorials/tmap.ps.gz
|
||||
@dirrm share/EMBOSS/test/embl
|
||||
@dirrm share/EMBOSS/test/data
|
||||
@dirrm share/EMBOSS/test
|
||||
@dirrm share/EMBOSS/jemboss/utils
|
||||
@dirrm share/EMBOSS/jemboss/resources
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/soap
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/server
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/programs
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/parser
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/form
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss
|
||||
@dirrm share/EMBOSS/jemboss/org/emboss
|
||||
@dirrm share/EMBOSS/jemboss/org
|
||||
@dirrm share/EMBOSS/jemboss/lib
|
||||
@dirrm share/EMBOSS/jemboss/images
|
||||
@dirrm share/EMBOSS/jemboss/embreo/cgi-bin
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs/uk/ac/mrc/hgmp/embreo/filemgr
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs/uk/ac/mrc/hgmp/embreo
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs/uk/ac/mrc/hgmp
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs/uk/ac/mrc
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs/uk/ac
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs/uk
|
||||
@dirrm share/EMBOSS/jemboss/embreo/api-docs
|
||||
@dirrm share/EMBOSS/jemboss/embreo/Modules
|
||||
@dirrm share/EMBOSS/jemboss/embreo
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/soap
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/programs
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/parser
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss
|
||||
@dirrm share/EMBOSS/jemboss/api/org/emboss
|
||||
@dirrm share/EMBOSS/jemboss/api/org
|
||||
@dirrm share/EMBOSS/jemboss/api
|
||||
@dirrm share/EMBOSS/jemboss
|
||||
@dirrm share/EMBOSS/data/REBASE
|
||||
@dirrm share/EMBOSS/data/PROSITE
|
||||
@dirrm share/EMBOSS/data/PRINTS
|
||||
|
||||
Loading…
Reference in New Issue
Block a user