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Code Issues Releases Activity

update to 3.0.0

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This commit is contained in:
Brendan Fabeny 2011-07-30 22:07:18 +00:00
parent 47a52c1493
commit 46e73a76d8
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=278594
5 changed files with 37 additions and 51 deletions
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19
math/jags/Makefile
View File

@ -7,22 +7,25 @@
#
PORTNAME= mcmc-jags
PORTVERSION= 2.2.0
PORTVERSION= 3.0.0
CATEGORIES= math
MASTER_SITES= SF:1,2,3
MASTER_SITE_SUBDIR= ${PORTNAME}/JAGS/2.x/Source/:1 \
MASTER_SITES= SF:1,2,3,4
MASTER_SITE_SUBDIR= ${PORTNAME}/JAGS/${PORTVERSION:C|\..*|.x|}/Source/:1 \
${PORTNAME}/Examples/2.x/:2 \
${PORTNAME}/Manuals/2.x/:3
${PORTNAME}/Manuals/2.x/:3 \
${PORTNAME}/Manuals/${PORTVERSION:C|\..*|.x|}/:4
DISTFILES= ${DISTNAME:S/mcmc-//:U}${EXTRACT_SUFX}:1
.if !defined(NOPORTDOCS)
DISTFILES+= classic-bugs.tar.gz:2 jags_developer_manual.pdf:3 \
jags_installation_manual.pdf:3 jags_user_manual.pdf:3
jags_installation_manual.pdf:4 jags_user_manual.pdf:4
EXTRACT_ONLY= ${DISTNAME:S/mcmc-//:U}${EXTRACT_SUFX}
.endif
MAINTAINER= bf@FreeBSD.org
COMMENT= Just Another Gibbs Sampler
LICENSE= GPLv2
OPTIONS= ATLAS "use ATLAS libraries instead of BLAS and LAPACK" off
DIST_SUBDIR= ${PORTNAME}
@ -35,7 +38,7 @@ CONFIGURE_ENV= LDFLAGS="${LDFLAGS}"
USE_FORTRAN= yes
USE_LDCONFIG= yes
USE_BISON= build
PLIST_SUB= PORTVERSION=${PORTVERSION}
PLIST_SUB= MODULEVERSION=${PORTVERSION:C|\..*||}
MAN1= jags.1
@ -64,8 +67,8 @@ post-patch:
post-install:
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
.for _M in developer installation user
@${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_${_M}_manual.pdf \
.for M in developer installation user
@${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_${M}_manual.pdf \
${DOCSDIR}
.endfor
.endif

12
math/jags/distinfo
View File

@ -1,10 +1,10 @@
SHA256 (mcmc-jags/JAGS-2.2.0.tar.gz) = 6615207cc19463c6398a8c5d02bfc0e3a659928d7da928396f95a63409addd04
SIZE (mcmc-jags/JAGS-2.2.0.tar.gz) = 1621102
SHA256 (mcmc-jags/JAGS-3.0.0.tar.gz) = 1cc9a5b1104e2d052a76a8faad2b615a1d9e7f02dd6cd8d514cb6ac9b6b6795e
SIZE (mcmc-jags/JAGS-3.0.0.tar.gz) = 1610047
SHA256 (mcmc-jags/classic-bugs.tar.gz) = ae6f9e25f00a3c2bf2d67c8b3fe040f937551ef75407ae0bd8cad5cbc3a8f768
SIZE (mcmc-jags/classic-bugs.tar.gz) = 81419
SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b
SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319
SHA256 (mcmc-jags/jags_installation_manual.pdf) = abce36d30b47da443714b08eaec537a97ca5196f2dd5c6ce3816e5b1035125dc
SIZE (mcmc-jags/jags_installation_manual.pdf) = 118975
SHA256 (mcmc-jags/jags_user_manual.pdf) = 77d4c2c7160596c34a5d3cec307d66efc44825e965ab43b83ef59fa349999964
SIZE (mcmc-jags/jags_user_manual.pdf) = 223214
SHA256 (mcmc-jags/jags_installation_manual.pdf) = 4180b8cac5f05099f54bb93be8084802300d000df20c1b235bebda0c1fc8fc88
SIZE (mcmc-jags/jags_installation_manual.pdf) = 103315
SHA256 (mcmc-jags/jags_user_manual.pdf) = 4aedff83e9f4d64c00fc374c16f25c877e97ea0cf407b8b5203cf48f2e943e16
SIZE (mcmc-jags/jags_user_manual.pdf) = 229343

11
math/jags/files/patch-src__modules__bugs__samplers__ConjugateFactory.cc
View File

@ -1,11 +0,0 @@
--- src/modules/bugs/samplers/ConjugateFactory.cc.orig 2011-01-20 05:12:21.000000000 -0500
+++ src/modules/bugs/samplers/ConjugateFactory.cc 2011-01-20 05:12:46.000000000 -0500
@@ -120,7 +120,7 @@
method = new ConjugateBeta(gv);
}
else {
- logic_error("Cannot find conjugate sampler for uniform");
+ throw logic_error("Cannot find conjugate sampler for uniform");
}
break;
default:

10
math/jags/files/patch-src_terminal_parser.yy
View File

@ -1,10 +0,0 @@
--- src/terminal/parser.yy.orig 2010-04-30 03:22:53.000000000 -0400
+++ src/terminal/parser.yy 2010-04-30 03:23:09.000000000 -0400
@@ -6,6 +6,7 @@
//#include <limits.h>
//#include <unistd.h>
+#include <climits>
#include <cstdlib>
#include <cstdio>
#include <iostream>

36
math/jags/pkg-plist
View File

@ -12,12 +12,14 @@ include/JAGS/compiler/NodeFactory.h
include/JAGS/compiler/ObsFuncTab.h
include/JAGS/compiler/ParseTree.h
include/JAGS/distribution/ArrayDist.h
include/JAGS/distribution/DistError.h
include/JAGS/distribution/DistPtr.h
include/JAGS/distribution/DistTab.h
include/JAGS/distribution/Distribution.h
include/JAGS/distribution/ScalarDist.h
include/JAGS/distribution/VectorDist.h
include/JAGS/function/ArrayFunction.h
include/JAGS/function/FuncError.h
include/JAGS/function/FuncTab.h
include/JAGS/function/Function.h
include/JAGS/function/FunctionPtr.h
@ -50,6 +52,7 @@ include/JAGS/model/MonitorFactory.h
include/JAGS/model/MonitorInfo.h
include/JAGS/model/NodeArray.h
include/JAGS/model/SymTab.h
include/JAGS/module/ModuleError.h
include/JAGS/rng/RNG.h
include/JAGS/rng/RmathRNG.h
include/JAGS/rng/RNGFactory.h
@ -74,23 +77,23 @@ include/JAGS/util/integer.h
include/JAGS/util/logical.h
include/JAGS/util/nainf.h
include/JAGS/version.h
lib/JAGS/modules-%%PORTVERSION%%/basemod.la
lib/JAGS/modules-%%PORTVERSION%%/basemod.so
lib/JAGS/modules-%%PORTVERSION%%/bugs.la
lib/JAGS/modules-%%PORTVERSION%%/bugs.so
lib/JAGS/modules-%%PORTVERSION%%/dic.la
lib/JAGS/modules-%%PORTVERSION%%/dic.so
lib/JAGS/modules-%%PORTVERSION%%/glm.la
lib/JAGS/modules-%%PORTVERSION%%/glm.so
lib/JAGS/modules-%%PORTVERSION%%/lecuyer.la
lib/JAGS/modules-%%PORTVERSION%%/lecuyer.so
lib/JAGS/modules-%%PORTVERSION%%/mix.la
lib/JAGS/modules-%%PORTVERSION%%/mix.so
lib/JAGS/modules-%%PORTVERSION%%/msm.la
lib/JAGS/modules-%%PORTVERSION%%/msm.so
lib/JAGS/modules-%%MODULEVERSION%%/basemod.la
lib/JAGS/modules-%%MODULEVERSION%%/basemod.so
lib/JAGS/modules-%%MODULEVERSION%%/bugs.la
lib/JAGS/modules-%%MODULEVERSION%%/bugs.so
lib/JAGS/modules-%%MODULEVERSION%%/dic.la
lib/JAGS/modules-%%MODULEVERSION%%/dic.so
lib/JAGS/modules-%%MODULEVERSION%%/glm.la
lib/JAGS/modules-%%MODULEVERSION%%/glm.so
lib/JAGS/modules-%%MODULEVERSION%%/lecuyer.la
lib/JAGS/modules-%%MODULEVERSION%%/lecuyer.so
lib/JAGS/modules-%%MODULEVERSION%%/mix.la
lib/JAGS/modules-%%MODULEVERSION%%/mix.so
lib/JAGS/modules-%%MODULEVERSION%%/msm.la
lib/JAGS/modules-%%MODULEVERSION%%/msm.so
lib/libjags.la
lib/libjags.so
lib/libjags.so.2
lib/libjags.so.3
lib/libjrmath.la
lib/libjrmath.so
lib/libjrmath.so.0
@ -457,12 +460,13 @@ libexec/jags-terminal
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm lib/JAGS/modules-%%PORTVERSION%%
@dirrm lib/JAGS/modules-%%MODULEVERSION%%
@dirrm lib/JAGS
@dirrm include/JAGS/util
@dirrm include/JAGS/sarray
@dirrm include/JAGS/sampler
@dirrm include/JAGS/rng
@dirrm include/JAGS/module
@dirrm include/JAGS/model
@dirrm include/JAGS/graph
@dirrm include/JAGS/function