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Code Issues Releases Activity

- Update to 5.68

Browse Source 
- Remove gcc version restriction

PR:		ports/122435
Submitted by:	Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
This commit is contained in:
Rong-En Fan 2008-04-05 10:47:11 +00:00
parent bf5de0a447
commit 483203c167
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=210568
3 changed files with 10 additions and 10 deletions
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3
biology/t_coffee/Makefile
View File

@ -7,7 +7,7 @@
#
PORTNAME= t_coffee
PORTVERSION= 4.96
PORTVERSION= 5.68
CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}
@ -23,7 +23,6 @@ MAKE_ENV= MV=${MV} USER_BIN=${PREFIX}/bin \
CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw
MAKEFILE= makefile
USE_GCC= 3.3
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/bin/t_coffee ${PREFIX}/bin

6
biology/t_coffee/distinfo
View File

@ -1,3 +1,3 @@
MD5 (T-COFFEE_distribution_Version_4.96.tar.gz) = ce40b2654663b7c22c1c8427fb5e32db
SHA256 (T-COFFEE_distribution_Version_4.96.tar.gz) = 49181acd69a5723fd5b11f579b1efe685b5289bf187985b25b40c514b0af0213
SIZE (T-COFFEE_distribution_Version_4.96.tar.gz) = 2863327
MD5 (T-COFFEE_distribution_Version_5.68.tar.gz) = 77316ccd4790c3c6e1b118681e15c10e
SHA256 (T-COFFEE_distribution_Version_5.68.tar.gz) = 137d188cef6f33a42cbd656482eb961d1588fef3091d2457ee0ef23fab16a6de
SIZE (T-COFFEE_distribution_Version_5.68.tar.gz) = 2875438

11
biology/t_coffee/pkg-plist
View File

@ -2,7 +2,6 @@ bin/t_coffee
%%PORTDOCS%%%%DOCSDIR%%/README4T-COFFEE
%%PORTDOCS%%%%DOCSDIR%%/aln_compare.doc.txt
%%PORTDOCS%%%%DOCSDIR%%/seq_reformat.doc.txt
%%PORTDOCS%%%%DOCSDIR%%/t_coffee.pdf
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.doc
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.htm
%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.txt
@ -33,6 +32,7 @@ bin/t_coffee
%%EXAMPLESDIR%%/g10.aln
%%EXAMPLESDIR%%/g15.aln
%%EXAMPLESDIR%%/g5.aln
%%EXAMPLESDIR%%/kinases.aln
%%EXAMPLESDIR%%/marna.tc_lib
%%EXAMPLESDIR%%/new_profile1_pdb1.aln
%%EXAMPLESDIR%%/new_profile1_pdb1.html
@ -52,6 +52,7 @@ bin/t_coffee
%%EXAMPLESDIR%%/profile1_pdb1.aln
%%EXAMPLESDIR%%/profile1_pdb1.fasta
%%EXAMPLESDIR%%/profile1_pdb1.html
%%EXAMPLESDIR%%/seq.fas
%%EXAMPLESDIR%%/profile1_pdb1_1.aln
%%EXAMPLESDIR%%/profile1_pdb1_1.html
%%EXAMPLESDIR%%/profile2_pdb2.aln
@ -86,10 +87,11 @@ bin/t_coffee
%%EXAMPLESDIR%%/sample_param_file.param
%%EXAMPLESDIR%%/sample_profile1.aln
%%EXAMPLESDIR%%/sample_profile2.aln
%%EXAMPLESDIR%%/sample_rnaseq1.fasta
%%EXAMPLESDIR%%/sample_seq1.aln
%%EXAMPLESDIR%%/sv.aln
%%EXAMPLESDIR%%/sample_seq1.fasta
%%EXAMPLESDIR%%/sample_seq2.fasta
%%EXAMPLESDIR%%/seq.fas
%%EXAMPLESDIR%%/sample_seq3.fasta
%%EXAMPLESDIR%%/sample_seq4.fasta
%%EXAMPLESDIR%%/sample_seq5.fasta
@ -133,13 +135,12 @@ bin/t_coffee
%%EXAMPLESDIR%%/sproteases_small.g10.html
%%EXAMPLESDIR%%/sproteases_small.g10.score_ascii
%%EXAMPLESDIR%%/sproteases_small.g15.cw_aln
%%EXAMPLESDIR%%/sproteases_small.ph
%%EXAMPLESDIR%%/sproteases_small.g15.html
%%EXAMPLESDIR%%/sproteases_small.html
%%EXAMPLESDIR%%/struc1.pdb
%%EXAMPLESDIR%%/sproteases_small.mafft
%%EXAMPLESDIR%%/sproteases_small.mcoffee
%%EXAMPLESDIR%%/sproteases_small.muscle
%%EXAMPLESDIR%%/sproteases_small.ph
%%EXAMPLESDIR%%/sproteases_small.probcons
%%EXAMPLESDIR%%/sproteases_small.score_ascii
%%EXAMPLESDIR%%/sproteases_small.score_html
@ -148,6 +149,7 @@ bin/t_coffee
%%EXAMPLESDIR%%/sproteases_small.tc_aln.html
%%EXAMPLESDIR%%/sproteases_small.template_file
%%EXAMPLESDIR%%/sproteases_small_dna.fasta
%%EXAMPLESDIR%%/struc1.pdb
%%EXAMPLESDIR%%/struc2.pdb
%%EXAMPLESDIR%%/struc3.pdb
%%EXAMPLESDIR%%/struc4.pdb
@ -155,7 +157,6 @@ bin/t_coffee
%%EXAMPLESDIR%%/struc6.pdb
%%EXAMPLESDIR%%/struc7.pdb
%%EXAMPLESDIR%%/struc8.pdb
%%EXAMPLESDIR%%/sv.aln
%%EXAMPLESDIR%%/sv.dnd
%%EXAMPLESDIR%%/sv.fasta
%%EXAMPLESDIR%%/sv.html