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Add treeviewx 0.1.1, a phylogenetic tree viewer.

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PR:		29770
Submitted by:	Tony Maher <tonym@biolateral.com.au>
This commit is contained in:
Johann Visagie 2001-08-17 08:39:28 +00:00
parent 6e3e0cc16f
commit 490da9f942
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=46356
9 changed files with 82 additions and 0 deletions
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1
biology/Makefile
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@ -39,6 +39,7 @@
SUBDIR += seaview
SUBDIR += sim4
SUBDIR += tinker
SUBDIR += treeviewx
SUBDIR += xdrawchem
SUBDIR += xmolwt

21
biology/treeviewx/Makefile Normal file
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@ -0,0 +1,21 @@
# Ports collection makefile for: treeviewx
# Date created: 04 August 2001
# Whom: tonym
#
# $FreeBSD$
#
PORTNAME= treeviewx
PORTVERSION= 0.1.1
CATEGORIES= biology
MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
DISTNAME= tv-${PORTVERSION}
MAINTAINER= tonym@biolateral.com.au
LIB_DEPENDS= wx_gtk.2:${PORTSDIR}/x11-toolkits/wxgtk
USE_GMAKE= yes
GNU_CONFIGURE= yes
.include <bsd.port.mk>

1
biology/treeviewx/distinfo Normal file
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@ -0,0 +1 @@
MD5 (tv-0.1.1.tar.gz) = 8cb3111130fa4623fb74d458659516fc

11
biology/treeviewx/files/patch-Makefile.am Normal file
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@ -0,0 +1,11 @@
--- Makefile.am.orig Sat Aug 4 13:17:56 2001
+++ Makefile.am Sat Aug 4 13:18:17 2001
@@ -125,7 +125,7 @@
all:
- cd ncl-2.0/src; make libncl.a; # Paul Lewis Nexus Class Library
+ cd ncl-2.0/src; $(MAKE) libncl.a; # Paul Lewis Nexus Class Library
${MAKE} $(PROGRAM);

28
biology/treeviewx/files/patch-Makefile.in Normal file
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@ -0,0 +1,28 @@
--- Makefile.in.orig Sat Aug 4 05:09:46 2001
+++ Makefile.in Sat Aug 4 15:45:59 2001
@@ -263,7 +263,7 @@
$(CC) -c $(CFLAGS) -I$(NCLDIR) -I$(TREELIBDIR) -I$(GPORTDIR) -DUSE_WXWINDOWS -o $@ $<
all:
- cd ncl-2.0/src; make libncl.a; # Paul Lewis Nexus Class Library
+ cd ncl-2.0/src; $(MAKE) libncl.a; # Paul Lewis Nexus Class Library
${MAKE} $(PROGRAM);
@@ -273,6 +273,16 @@
tview.o : tview.cpp tview.h tproject.h
tv.o : tv.cpp tv.h tdoc.h tview.h tproject.h
tdoc.o: tdoc.cpp tdoc.h tview.h
+
+install : $(PROGRAM)
+ $(mkinstalldirs) $(DESTDIR)$(bindir)
+ @list='$(PROGRAM)'; for p in $$list; do \
+ if test -f $$p; then \
+ echo " $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed '$(transform)'`"; \
+ $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed '$(transform)' `; \
+ else :; fi; \
+ done
+
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.

10
biology/treeviewx/files/patch-configure Normal file
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@ -0,0 +1,10 @@
--- configure.orig Thu Aug 16 15:55:01 2001
+++ configure Thu Aug 16 15:55:13 2001
@@ -520,7 +520,6 @@
ac_n= ac_c='\c' ac_t=
fi
- (tview.cpp)
ac_aux_dir=
for ac_dir in $srcdir $srcdir/.. $srcdir/../..; do
if test -f $ac_dir/install-sh; then

1
biology/treeviewx/pkg-comment Normal file
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@ -0,0 +1 @@
A phylogenetic tree viewer

8
biology/treeviewx/pkg-descr Normal file
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@ -0,0 +1,8 @@
"TreeView X is program to display phylogenetic trees on Unix-like platforms.
It can read and display NEXUS and Newick format tree files (such as those
output by PAUP*, ClustalX, TREE-PUZZLE, and other programs)."
WWW: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
--
Tony Maher <tonym@biolateral.com.au>

1
biology/treeviewx/pkg-plist Normal file
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@ -0,0 +1 @@
bin/tv