mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-27 05:10:36 +00:00
Io_lib is a library of file reading and writing code to provide a
general purpose trace file (and Experiment File) reading interface. The programmer simply calls the (eg) read_reading to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. WWW: http://staden.sourceforge.net/ PR: ports/138254 Submitted by: Wen Heping <wenheping at gmail.com>
This commit is contained in:
Martin Wilke
parent
5aa6f9382f
commit
4afd96b25b
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=240487
@ -37,6 +37,7 @@
|
|||||||
SUBDIR += gperiodic
|
SUBDIR += gperiodic
|
||||||
SUBDIR += grappa
|
SUBDIR += grappa
|
||||||
SUBDIR += hmmer
|
SUBDIR += hmmer
|
||||||
|
SUBDIR += iolib
|
||||||
SUBDIR += jalview
|
SUBDIR += jalview
|
||||||
SUBDIR += kinemage
|
SUBDIR += kinemage
|
||||||
SUBDIR += lagan
|
SUBDIR += lagan
|
||||||
|
|||||||
32
biology/iolib/Makefile
Normal file
32
biology/iolib/Makefile
Normal file
@ -0,0 +1,32 @@
|
|||||||
|
# New ports collection makefile for: io_lib
|
||||||
|
# Date created: 27 Aug, 2009
|
||||||
|
# Whom: Wen Heping <wenheping@gmail.com>
|
||||||
|
#
|
||||||
|
# $FreeBSD$
|
||||||
|
#
|
||||||
|
|
||||||
|
PORTNAME= io_lib
|
||||||
|
PORTVERSION= 1.12.1
|
||||||
|
CATEGORIES= biology
|
||||||
|
MASTER_SITES= SF
|
||||||
|
MASTER_SITE_SUBDIR= staden/${PORTNAME}/${PORTVERSION}
|
||||||
|
|
||||||
|
MAINTAINER= wenheping@gmail.com
|
||||||
|
COMMENT= A general purpose trace file(and Experiment File) reading interface
|
||||||
|
|
||||||
|
USE_AUTOTOOLS= libtool:22:env
|
||||||
|
GNU_CONFIGURE= yes
|
||||||
|
USE_GMAKE= yes
|
||||||
|
USE_LDCONFIG= yes
|
||||||
|
|
||||||
|
MAN1= srf_index_hash.1 srf_info.1 srf_list.1 illumina2srf.1 \
|
||||||
|
srf2fasta.1 srf2fastq.1
|
||||||
|
MAN3= read_scf_header.3 read_allocate.3 ExperimentFile.3 \
|
||||||
|
write_reading.3 write_scf.3 read_deallocate.3 \
|
||||||
|
fwrite_reading.3 read2scf.3 scf2read.3 \
|
||||||
|
fwrite_scf.3 write_scf_header.3 read_reading.3 \
|
||||||
|
read_scf.3 exp2read.3 fread_reading.3 \
|
||||||
|
read2exp.3 fread_scf.3
|
||||||
|
MAN4= Read.4
|
||||||
|
|
||||||
|
.include <bsd.port.mk>
|
||||||
3
biology/iolib/distinfo
Normal file
3
biology/iolib/distinfo
Normal file
@ -0,0 +1,3 @@
|
|||||||
|
MD5 (io_lib-1.12.1.tar.gz) = f511698b766d5bd7d15a8269bdcddf84
|
||||||
|
SHA256 (io_lib-1.12.1.tar.gz) = 732fc729662f380861e12fd9006a1a1c072f459589b6d2c49a7c01c88a9cdf01
|
||||||
|
SIZE (io_lib-1.12.1.tar.gz) = 772314
|
||||||
7
biology/iolib/pkg-descr
Normal file
7
biology/iolib/pkg-descr
Normal file
@ -0,0 +1,7 @@
|
|||||||
|
Io_lib is a library of file reading and writing code to provide a
|
||||||
|
general purpose trace file (and Experiment File) reading interface.
|
||||||
|
The programmer simply calls the (eg) read_reading to create a "Read"
|
||||||
|
C structure with the data loaded into memory. It has been compiled
|
||||||
|
and tested on a variety of unix systems, MacOS X and MS Windows.
|
||||||
|
|
||||||
|
WWW: http://staden.sourceforge.net/
|
||||||
64
biology/iolib/pkg-plist
Normal file
64
biology/iolib/pkg-plist
Normal file
@ -0,0 +1,64 @@
|
|||||||
|
include/io_lib/Read.h
|
||||||
|
include/io_lib/abi.h
|
||||||
|
include/io_lib/alf.h
|
||||||
|
include/io_lib/array.h
|
||||||
|
include/io_lib/compress.h
|
||||||
|
include/io_lib/compression.h
|
||||||
|
include/io_lib/deflate_interlaced.h
|
||||||
|
include/io_lib/error.h
|
||||||
|
include/io_lib/expFileIO.h
|
||||||
|
include/io_lib/fpoint.h
|
||||||
|
include/io_lib/hash_table.h
|
||||||
|
include/io_lib/io_lib_config.h
|
||||||
|
include/io_lib/jenkins_lookup3.h
|
||||||
|
include/io_lib/mFILE.h
|
||||||
|
include/io_lib/mach-io.h
|
||||||
|
include/io_lib/misc.h
|
||||||
|
include/io_lib/open_trace_file.h
|
||||||
|
include/io_lib/os.h
|
||||||
|
include/io_lib/plain.h
|
||||||
|
include/io_lib/scf.h
|
||||||
|
include/io_lib/scf_extras.h
|
||||||
|
include/io_lib/seqIOABI.h
|
||||||
|
include/io_lib/seqIOCTF.h
|
||||||
|
include/io_lib/sff.h
|
||||||
|
include/io_lib/srf.h
|
||||||
|
include/io_lib/stdio_hack.h
|
||||||
|
include/io_lib/tar_format.h
|
||||||
|
include/io_lib/traceType.h
|
||||||
|
include/io_lib/translate.h
|
||||||
|
include/io_lib/vlen.h
|
||||||
|
include/io_lib/xalloc.h
|
||||||
|
include/io_lib/ztr.h
|
||||||
|
bin/append_sff
|
||||||
|
bin/convert_trace
|
||||||
|
bin/extract_fastq
|
||||||
|
bin/extract_qual
|
||||||
|
bin/extract_seq
|
||||||
|
bin/get_comment
|
||||||
|
bin/hash_extract
|
||||||
|
bin/hash_list
|
||||||
|
bin/hash_sff
|
||||||
|
bin/hash_tar
|
||||||
|
bin/index_tar
|
||||||
|
bin/io_lib-config
|
||||||
|
bin/makeSCF
|
||||||
|
bin/scf_dump
|
||||||
|
bin/scf_info
|
||||||
|
bin/scf_update
|
||||||
|
bin/srf2fasta
|
||||||
|
bin/srf2fastq
|
||||||
|
bin/srf_dump_all
|
||||||
|
bin/srf_extract_hash
|
||||||
|
bin/srf_extract_linear
|
||||||
|
bin/srf_filter
|
||||||
|
bin/srf_index_hash
|
||||||
|
bin/srf_info
|
||||||
|
bin/srf_list
|
||||||
|
bin/trace_dump
|
||||||
|
bin/ztr_dump
|
||||||
|
lib/libstaden-read.a
|
||||||
|
lib/libstaden-read.la
|
||||||
|
lib/libstaden-read.so
|
||||||
|
lib/libstaden-read.so.1
|
||||||
|
@dirrm include/io_lib
|
||||||
Loading…
Reference in New Issue
Block a user