mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2025-01-16 07:58:04 +00:00
Code Issues Releases Activity

Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).

Browse Source
This commit is contained in:
Alexey Dokuchaev 2015-02-24 11:42:53 +00:00
parent 70ed33e055
commit 4be0124f6e
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=379787
3 changed files with 18 additions and 9 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
biology/ugene/Makefile
View File

@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= ugene
DISTVERSION= 1.15.1
DISTVERSION= 1.16.0
CATEGORIES= biology science
MASTER_SITES= http://ugene.unipro.ru/downloads/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
@ -71,6 +71,8 @@ post-patch:
${WRKSRC}/src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.h
@${REINPLACE_CMD} -e 's|-bit version|& for ${OPSYS}|' \
${WRKSRC}/src/ugeneui/src/main_window/AboutDialogController.cpp
@${REINPLACE_CMD} -e '/ifdef/s|Q_OS_LINUX|Q_OS_UNIX|' \
${WRKSRC}/src/corelibs/U2Test/src/gui_tests/GUITestLauncher.cpp
.for x in ugenecl ugeneui plugins_checker
@${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro
.endfor

16
biology/ugene/distinfo
View File

@ -1,8 +1,8 @@
SHA256 (ugene/ugene-1.15.1.tar.gz) = ac065ed7352eaa2aae137f0745f9aecfaf87c736597ee5bef6e65bd8c752b205
SIZE (ugene/ugene-1.15.1.tar.gz) = 20208866
SHA256 (ugene/QueryDesigner_UserManual.pdf) = cc82121ae7564fb314aba545ae61336c5301b8c70b1fe92d5cec4208bae77c40
SIZE (ugene/QueryDesigner_UserManual.pdf) = 824749
SHA256 (ugene/UniproUGENE_UserManual.pdf) = 013e9f2ef3f23976e2f1e76ccb7b71b0fe77b1756bda5dc28896cb23dc855bf2
SIZE (ugene/UniproUGENE_UserManual.pdf) = 12156826
SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = a0fbc5b3919959901ef285a2f7cabbd3c34fe5d93c6377f3aec905c2ed2717e7
SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 11782902
SHA256 (ugene/ugene-1.16.0.tar.gz) = ea87019d12d2db07932e510ccd935eed1a59e6ddc71cdee3b21bb7e2fd060878
SIZE (ugene/ugene-1.16.0.tar.gz) = 20390008
SHA256 (ugene/QueryDesigner_UserManual.pdf) = d261125f8ad155ae022a47ecf504febfb45ae7740f822be9b0c508219bb732fb
SIZE (ugene/QueryDesigner_UserManual.pdf) = 824789
SHA256 (ugene/UniproUGENE_UserManual.pdf) = 94683abe849eecc88735d7748e75f4e30051d1dc8a6b148dbeb3d2ac4ed02a1d
SIZE (ugene/UniproUGENE_UserManual.pdf) = 13237321
SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = 9dec38e2e5c89f6dbde328bf5ef17d81f5d1309812b8d2c5cf5864c1ad159eff
SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 22805160

7
biology/ugene/pkg-plist
View File

@ -320,9 +320,12 @@ lib/ugene/ugenem
lib/ugene/ugeneui
man/man1/ugene.1.gz
share/applications/ugene.desktop
share/icons/application-x-ugene-ext.png
share/mime/application-x-ugene.xml
share/pixmaps/ugene.png
share/pixmaps/ugene.xpm
%%DATADIR%%/DBXRefRegistry.txt
%%DATADIR%%/adapters/adapters.fasta
%%DATADIR%%/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut
%%DATADIR%%/back_translation/Bacteria/Bacillus_subtilis.cut
%%DATADIR%%/back_translation/Bacteria/Escherichia_coli.cut
@ -1416,6 +1419,7 @@ share/pixmaps/ugene.xpm
%%DATADIR%%/workflow_samples/NGS/consensus.uwl
%%DATADIR%%/workflow_samples/NGS/extract_coverage.uwl
%%DATADIR%%/workflow_samples/NGS/extract_transcript_seq.uwl
%%DATADIR%%/workflow_samples/NGS/fastqc.uwl
%%DATADIR%%/workflow_samples/NGS/raw_chip.uwl
%%DATADIR%%/workflow_samples/NGS/raw_dna.uwl
%%DATADIR%%/workflow_samples/NGS/raw_ngs/chipseq/chipseq_paired.uwl
@ -1434,6 +1438,8 @@ share/pixmaps/ugene.xpm
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset_paired.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo.uwl
%%DATADIR%%/workflow_samples/NGS/variation_annotation.uwl
%%DATADIR%%/workflow_samples/Sanger sequencing/trim-and-align.uwl
%%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl
%%DATADIR%%/workflow_samples/Scenarios/find_inverted_repeats.uwl
%%DATADIR%%/workflow_samples/Scenarios/find_sequences.uwl
@ -1450,3 +1456,4 @@ share/pixmaps/ugene.xpm
%%DATADIR%%/workflow_samples/users/Get the second half of sequence.usa
%%DATADIR%%/workflow_samples/users/LinkData Fetch.usa
%%DATADIR%%/workflow_samples/users/QualityFilter.usa
%%DATADIR%%/workflow_samples/users/Read one sequence.usa