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Code Issues Releases Activity

- Update to 0.14

Browse Source 
Submitted by:	Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by:	maintainer timeout (3 months)
This commit is contained in:
Frank J. Laszlo 2006-12-07 15:43:27 +00:00
parent 67b8ad14c8
commit 4ffcd931fe
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=179121
4 changed files with 48 additions and 56 deletions
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26
biology/p5-Bio-Phylo/Makefile
View File

@ -6,7 +6,7 @@
#
PORTNAME= Bio-Phylo
PORTVERSION= 0.12
PORTVERSION= 0.14
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN}
MASTER_SITE_SUBDIR= Bio
@ -15,15 +15,15 @@ PKGNAMEPREFIX= p5-
MAINTAINER= aaron@FreeBSD.org
COMMENT= Phylogenetic analysis using perl
BUILD_DEPENDS= ${SITE_PERL}/${PERL_ARCH}/Math/Random.pm:${PORTSDIR}/math/p5-Math-Random \
${SITE_PERL}/SVG.pm:${PORTSDIR}/textproc/p5-SVG \
${SITE_PERL}/Exception/Class.pm:${PORTSDIR}/devel/p5-Exception-Class \
${SITE_PERL}/${PERL_ARCH}/Scalar/Util.pm:${PORTSDIR}/lang/p5-Scalar-List-Utils \
${SITE_PERL}/IO/String.pm:${PORTSDIR}/devel/p5-IO-String \
${SITE_PERL}/XML/Simple.pm:${PORTSDIR}/textproc/p5-XML-Simple
RUN_DEPENDS= ${BUILD_DEPENDS}
RUN_DEPENDS= p5-Exception-Class>=1.23:${PORTSDIR}/devel/p5-Exception-Class \
p5-Math-Random>=0.67:${PORTSDIR}/math/p5-Math-Random \
p5-IO-String>=1.05:${PORTSDIR}/devel/p5-IO-String \
p5-SVG>=1.07:${PORTSDIR}/textproc/p5-SVG
MAN1= dndtag.pl.1
MAN3= Bio::Phylo.3 \
Bio::Phylo::ConfigData.3 \
Bio::Phylo::Forest.3 \
Bio::Phylo::Forest::Node.3 \
Bio::Phylo::Forest::Tree.3 \
@ -32,12 +32,8 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Listable.3 \
Bio::Phylo::Manual.3 \
Bio::Phylo::Matrices.3 \
Bio::Phylo::Matrices::Alignment.3 \
Bio::Phylo::Matrices::Datum.3 \
Bio::Phylo::Matrices::Matrix.3 \
Bio::Phylo::Matrices::Sequence.3 \
Bio::Phylo::Parsers::Fastnewick.3 \
Bio::Phylo::Parsers::Fastnexus.3 \
Bio::Phylo::Parsers::Newick.3 \
Bio::Phylo::Parsers::Nexus.3 \
Bio::Phylo::Parsers::Table.3 \
@ -54,12 +50,12 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Util::Exceptions.3 \
Bio::Phylo::Util::IDPool.3
PERL_CONFIGURE= yes
PERL_MODBUILD= yes
.include <bsd.port.pre.mk>
.if ${PERL_LEVEL} < 500800
IGNORE= requires at least Perl 5.8 due to dependencies. Please install lang/perl5.8 and try again
.if ${PERL_LEVEL} < 500702
IGNORE= requires at least Perl 5.7.2 due to dependencies. Please install lang/perl5.8 and try again
.endif
.include <bsd.port.post.mk>

6
biology/p5-Bio-Phylo/distinfo
View File

@ -1,3 +1,3 @@
MD5 (Bio-Phylo-0.12.tar.gz) = 82a8bbe68d7f2f2e67369c5c19ea1d72
SHA256 (Bio-Phylo-0.12.tar.gz) = 7560554ba4e27296fa2411bf4c5beab26aef6dcaf729aa21a910509e894c455d
SIZE (Bio-Phylo-0.12.tar.gz) = 105975
MD5 (Bio-Phylo-0.14.tar.gz) = a3e8b1af9c5d15128b4a6a9320d89a7f
SHA256 (Bio-Phylo-0.14.tar.gz) = d35f125ea23a70ceedffef567b6f7838bea8ab62704d09f0704c14138855c99f
SIZE (Bio-Phylo-0.14.tar.gz) = 106299

2
biology/p5-Bio-Phylo/pkg-descr
View File

@ -2,5 +2,5 @@ This is the base class for the Bio::Phylo package. All other modules
inherit from it, the methods defined here are applicable to all. Consult
the manual for usage examples: Bio::Phylo::Manual.
WWW: http://search.cpan.org/dist/Bio-Phylo
WWW: http://search.cpan.org/dist/Bio-Phylo/
Author: Rutger Vos <rvosa@sfu.ca>

70
biology/p5-Bio-Phylo/pkg-plist
View File

@ -1,42 +1,38 @@
bin/LRmb.pl
bin/age2bl.pl
bin/bremer.pl
bin/dnd2svg.pl
bin/droptip.pl
@comment $FreeBSD$
bin/postmb.pl
%%SITE_PERL%%/Bio/Phylo.pm
%%SITE_PERL%%/Bio/Phylo/Forest.pm
%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
%%SITE_PERL%%/Bio/Phylo/Generator.pm
%%SITE_PERL%%/Bio/Phylo/IO.pm
%%SITE_PERL%%/Bio/Phylo/Listable.pm
%%SITE_PERL%%/Bio/Phylo/Manual.pod
%%SITE_PERL%%/Bio/Phylo/Matrices.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Alignment.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Sequence.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Fastnewick.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Fastnexus.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
%%SITE_PERL%%/Bio/Phylo/Taxa.pm
%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
bin/droptip.pl
bin/dndtag.pl
bin/dnd2svg.pl
bin/bremer.pl
bin/age2bl.pl
bin/LRmb.pl
%%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo/.packlist
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
%%SITE_PERL%%/Bio/Phylo/Taxa.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
%%SITE_PERL%%/Bio/Phylo/Matrices.pm
%%SITE_PERL%%/Bio/Phylo/Manual.pod
%%SITE_PERL%%/Bio/Phylo/Listable.pm
%%SITE_PERL%%/Bio/Phylo/IO.pm
%%SITE_PERL%%/Bio/Phylo/Generator.pm
%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
%%SITE_PERL%%/Bio/Phylo/Forest.pm
%%SITE_PERL%%/Bio/Phylo/ConfigData.pm
%%SITE_PERL%%/Bio/Phylo.pm
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer