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biology/hyphy: Update to version 2.5.19

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Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.19
This commit is contained in:
Joseph Mingrone 2020-10-13 01:05:45 +00:00
parent 6edea31670
commit 520d533f8b
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=552165
3 changed files with 4 additions and 24 deletions
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2
biology/hyphy/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= hyphy
DISTVERSION= 2.5.18
DISTVERSION= 2.5.19
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org

6
biology/hyphy/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1599060037
SHA256 (veg-hyphy-2.5.18_GH0.tar.gz) = 8eb978eb55d659fccb7e6a29b5ff8a87425f3317d5237c3b706ea918d4d5cf82
SIZE (veg-hyphy-2.5.18_GH0.tar.gz) = 5250528
TIMESTAMP = 1602549659
SHA256 (veg-hyphy-2.5.19_GH0.tar.gz) = 44464c24b380aa25161639cee3ab224d9b5c29fe8079281be2bdde8f171a2e1b
SIZE (veg-hyphy-2.5.19_GH0.tar.gz) = 5315357

20
biology/hyphy/files/patch-src_core_matrix.cpp
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@ -1,20 +0,0 @@
--- src/core/matrix.cpp.orig 2020-09-02 16:12:43 UTC
+++ src/core/matrix.cpp
@@ -3128,8 +3128,6 @@ void _Matrix::AddMatrix (_Matrix& storage, _Matrix
CELL_OP (idx+8);
CELL_OP (idx+12);
}
- }
-
#else
for (long idx = 0; idx < upto; idx+=4) {
stData[idx]+=argData[idx];
@@ -3138,7 +3136,7 @@ void _Matrix::AddMatrix (_Matrix& storage, _Matrix
stData[idx+3]+=argData[idx+3];
}
#endif
-
+ }
if (subtract)
for (long idx = upto; idx < secondArg.lDim; idx++) {
stData[idx]-=argData[idx];