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Code Issues Releases Activity

- Added STAGE support

Browse Source 
- Update to 3.5.0

PR:		190314
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
This commit is contained in:
Wen Heping 2014-05-31 13:56:17 +00:00
parent cbd296338f
commit 5cfe3554eb
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=355973
6 changed files with 10 additions and 167 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
science/py-mlpy/Makefile
View File

@ -2,26 +2,26 @@
# $FreeBSD$
PORTNAME= mlpy
PORTVERSION= 2.2.2
PORTREVISION= 4
PORTVERSION= 3.5.0
CATEGORIES= science python
MASTER_SITES= https://mlpy.fbk.eu/download/src/
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}%20${PORTVERSION}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= MLPY-${PORTVERSION}
MAINTAINER= wen@FreeBSD.org
COMMENT= High performance Python package for predictive modeling
LICENSE= GPLv3
BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
cython>0:${PORTSDIR}/lang/cython
RUN_DEPENDS:= ${BUILD_DEPENDS}
LIB_DEPENDS= gsl:${PORTSDIR}/math/gsl
LIB_DEPENDS= libgsl.so:${PORTSDIR}/math/gsl
USE_LDCONFIG= yes
CFLAGS+= -I${LOCALBASE}/include -I${PYTHON_SITELIBDIR}/numpy/core
LDFLAGS+= -L${LOCALBASE}/lib
USE_PYTHON= yes
USE_PYDISTUTILS= yes
PYDISTUTILS_PKGNAME= MLPY
PYDISTUTILS_AUTOPLIST= yes
NO_STAGE= yes
.include <bsd.port.mk>

4
science/py-mlpy/distinfo
View File

@ -1,2 +1,2 @@
SHA256 (MLPY-2.2.2.tar.gz) = 2c2864834ced9caddea83bc05ffc7526325cf5bffcfd6c3c4cf13097312b0057
SIZE (MLPY-2.2.2.tar.gz) = 235665
SHA256 (mlpy-3.5.0.tar.gz) = 344fa75fbf9f76af72f6a346d5309613defc4d244bac13c218e509a51d68bf6a
SIZE (mlpy-3.5.0.tar.gz) = 1961206

17
science/py-mlpy/files/patch-mlpy-cwt-cwb.c
View File

@ -1,17 +0,0 @@
--- mlpy/cwt/cwb.c.orig 2010-12-21 09:10:04.000000000 +0800
+++ mlpy/cwt/cwb.c 2010-12-21 09:12:05.000000000 +0800
@@ -142,9 +142,12 @@
complex double p = 0.0 + 0.0I;
double sw, norm = 1.0;
-
+#ifndef __STD_IEC_559_COMPLEX__ /* FreeBSD lacks C99 cpow() */
+ p = - gsl_complex_pow(0.0 + 1.0I, order) / sqrt(gsl_sf_gamma(order + 0.5));
+#else
p = - cpow(0.0 + 1.0I, order) / sqrt(gsl_sf_gamma(order + 0.5));
-
+#endif /* __STD_IEC_559_COMPLEX__ */
+
for (i=0; i<n; i++)
{
if (nm == 1)

17
science/py-mlpy/files/patch-setup.py
View File

@ -1,17 +0,0 @@
--- setup.py.orig 2010-10-18 20:08:13.000000000 +0800
+++ setup.py 2010-12-23 15:19:09.000000000 +0800
@@ -158,11 +158,13 @@
"mlpy/liblinear/liblinear/blas/daxpy.c",
"mlpy/liblinear/liblinear/blas/ddot.c",
"mlpy/liblinear/liblinear/blas/dnrm2.c",
- "mlpy/liblinear/liblinear/blas/dscal.c"],
+ "mlpy/liblinear/liblinear/blas/dscal.c"],
+ include_dirs=base_include,
extra_compile_args=extra_compile_args),
Extension("mlpy.libsvm",
["mlpy/libsvm/libsvm/svm.cpp",
"mlpy/libsvm/libsvm.pyx"],
+ include_dirs=base_include,
extra_compile_args=extra_compile_args)
],
scripts=["mlpy/tools/mlpy-test"],

2
science/py-mlpy/pkg-descr
View File

@ -8,4 +8,4 @@ selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.
WWW: http://mlpy.fbk.eu/
WWW: http://mlpy.sourceforge.net/

123
science/py-mlpy/pkg-plist
View File

@ -1,123 +0,0 @@
bin/mlpy-test
%%PYTHON_SITELIBDIR%%/mlpy/__init__.py
%%PYTHON_SITELIBDIR%%/mlpy/__init__.pyc
%%PYTHON_SITELIBDIR%%/mlpy/__init__.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_borda.py
%%PYTHON_SITELIBDIR%%/mlpy/_borda.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_borda.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_canberra.py
%%PYTHON_SITELIBDIR%%/mlpy/_canberra.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_canberra.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_ci.py
%%PYTHON_SITELIBDIR%%/mlpy/_ci.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_ci.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_cwt.py
%%PYTHON_SITELIBDIR%%/mlpy/_cwt.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_cwt.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_data.py
%%PYTHON_SITELIBDIR%%/mlpy/_data.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_data.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_dlda.py
%%PYTHON_SITELIBDIR%%/mlpy/_dlda.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_dlda.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_dtw.py
%%PYTHON_SITELIBDIR%%/mlpy/_dtw.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_dtw.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_dwt.py
%%PYTHON_SITELIBDIR%%/mlpy/_dwt.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_dwt.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_dwtfs.py
%%PYTHON_SITELIBDIR%%/mlpy/_dwtfs.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_dwtfs.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_elasticnet.py
%%PYTHON_SITELIBDIR%%/mlpy/_elasticnet.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_elasticnet.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_extend.py
%%PYTHON_SITELIBDIR%%/mlpy/_extend.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_extend.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_fda.py
%%PYTHON_SITELIBDIR%%/mlpy/_fda.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_fda.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_fssun.py
%%PYTHON_SITELIBDIR%%/mlpy/_fssun.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_fssun.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_hcluster.py
%%PYTHON_SITELIBDIR%%/mlpy/_hcluster.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_hcluster.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_imputing.py
%%PYTHON_SITELIBDIR%%/mlpy/_imputing.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_imputing.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_irelief.py
%%PYTHON_SITELIBDIR%%/mlpy/_irelief.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_irelief.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_iuwt.py
%%PYTHON_SITELIBDIR%%/mlpy/_iuwt.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_iuwt.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_kernel.py
%%PYTHON_SITELIBDIR%%/mlpy/_kernel.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_kernel.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_kmeans.py
%%PYTHON_SITELIBDIR%%/mlpy/_kmeans.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_kmeans.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_kmedoids.py
%%PYTHON_SITELIBDIR%%/mlpy/_kmedoids.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_kmedoids.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_knn.py
%%PYTHON_SITELIBDIR%%/mlpy/_knn.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_lars.py
%%PYTHON_SITELIBDIR%%/mlpy/_lars.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_lars.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_knn.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_metrics.py
%%PYTHON_SITELIBDIR%%/mlpy/_metrics.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_metrics.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_minkowski.py
%%PYTHON_SITELIBDIR%%/mlpy/_minkowski.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_minkowski.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_pda.py
%%PYTHON_SITELIBDIR%%/mlpy/_pda.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_pda.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_ranking.py
%%PYTHON_SITELIBDIR%%/mlpy/_ranking.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_ranking.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_resampling.py
%%PYTHON_SITELIBDIR%%/mlpy/_resampling.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_resampling.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_ridgeregression.py
%%PYTHON_SITELIBDIR%%/mlpy/_ridgeregression.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_ridgeregression.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_spectralreg.py
%%PYTHON_SITELIBDIR%%/mlpy/_spectralreg.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_spectralreg.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_srda.py
%%PYTHON_SITELIBDIR%%/mlpy/_srda.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_srda.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_svm.py
%%PYTHON_SITELIBDIR%%/mlpy/_svm.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_svm.pyo
%%PYTHON_SITELIBDIR%%/mlpy/_uwt.py
%%PYTHON_SITELIBDIR%%/mlpy/_uwt.pyc
%%PYTHON_SITELIBDIR%%/mlpy/_uwt.pyo
%%PYTHON_SITELIBDIR%%/mlpy/canberra.so
%%PYTHON_SITELIBDIR%%/mlpy/cwb.so
%%PYTHON_SITELIBDIR%%/mlpy/dtw.so
%%PYTHON_SITELIBDIR%%/mlpy/dwt.so
%%PYTHON_SITELIBDIR%%/mlpy/elasticnet.so
%%PYTHON_SITELIBDIR%%/mlpy/fssun.so
%%PYTHON_SITELIBDIR%%/mlpy/hc.so
%%PYTHON_SITELIBDIR%%/mlpy/irregularuwt.so
%%PYTHON_SITELIBDIR%%/mlpy/gslpy.so
%%PYTHON_SITELIBDIR%%/mlpy/kmeans.so
%%PYTHON_SITELIBDIR%%/mlpy/kernel.so
%%PYTHON_SITELIBDIR%%/mlpy/knn.so
%%PYTHON_SITELIBDIR%%/mlpy/liblinear.so
%%PYTHON_SITELIBDIR%%/mlpy/libsvm.so
%%PYTHON_SITELIBDIR%%/mlpy/misc.so
%%PYTHON_SITELIBDIR%%/mlpy/peaksd.so
%%PYTHON_SITELIBDIR%%/mlpy/spectralreg.so
%%PYTHON_SITELIBDIR%%/mlpy/svm.so
%%PYTHON_SITELIBDIR%%/mlpy/uwt.so
%%PYTHON_SITELIBDIR%%/mlpy/version.py
%%PYTHON_SITELIBDIR%%/mlpy/version.pyc
%%PYTHON_SITELIBDIR%%/mlpy/version.pyo
@dirrm %%PYTHON_SITELIBDIR%%/mlpy