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math/gsl: update to 2.7

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From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M. Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
	* updated exponential fitting example for nonlinear least squares
	* added banded LU decomposition and solver (gsl_linalg_LU_band)
	* New functions added to the library:
	      - gsl_matrix_norm1
	      - gsl_spmatrix_norm1
	      - gsl_matrix_complex_conjtrans_memcpy
	      - gsl_linalg_QL: decomp, unpack
	      - gsl_linalg_complex_QR_* (thanks to Christian Krueger)
	      - gsl_vector_sum
	      - gsl_matrix_scale_rows
	      - gsl_matrix_scale_columns
	      - gsl_multilarge_linear_matrix_ptr
	      - gsl_multilarge_linear_rhs_ptr
	      - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense)
	      - gsl_spmatrix_dense_sub
	      - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply
	      - gsl_linalg_QR_UD: decomp, lssolve
	      - gsl_linalg_QR_UU: decomp, lssolve, QTvec
	      - gsl_linalg_QR_UZ: decomp
	      - gsl_multifit_linear_lcurvature
	      - gsl_spline2d_eval_extrap
	* bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me)
	* made gsl_sf_legendre_array_index() inline and documented
	      - gsl_sf_legendre_nlm()

[1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS

PR:		256423
Exp-run by:	antoine
This commit is contained in:
Tobias C. Berner 2021-06-05 09:30:51 +02:00
parent dc8d8b47cd
commit 63e653adaa
66 changed files with 81 additions and 42 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
astro/astrometry/Makefile
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@ -2,6 +2,7 @@
PORTNAME= astrometry
PORTVERSION= 0.85
PORTREVISION= 1
CATEGORIES= astro
MASTER_SITES= http://astrometry.net/downloads/
DISTNAME= ${PORTNAME}.net-${PORTVERSION}

1
astro/gnuastro/Makefile
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@ -2,6 +2,7 @@
PORTNAME= gnuastro
PORTVERSION= 0.15
PORTREVISION= 1
CATEGORIES= astro
MASTER_SITES= GNU

2
astro/siril/Makefile
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@ -1,6 +1,6 @@
PORTNAME= siril
DISTVERSION= 0.99.8.1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= astro graphics
MASTER_SITES= https://free-astro.org/download/

1
astro/stellarsolver/Makefile
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@ -1,5 +1,6 @@
PORTNAME= stellarsolver
DISTVERSION= 1.5
PORTREVISION= 1
CATEGORIES= astro
MAINTAINER= acm@FreeBSD.org

1
audio/snd/Makefile
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@ -2,6 +2,7 @@
PORTNAME= snd
PORTVERSION= 21.2
PORTREVISION= 1
CATEGORIES= audio
MASTER_SITES= https://ccrma.stanford.edu/software/snd/ \
SF

1
benchmarks/flowgrind/Makefile
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@ -3,6 +3,7 @@
PORTNAME= flowgrind
PORTVERSION= 0.8.2
DISTVERSIONPREFIX= ${PORTNAME}-
PORTREVISION= 1
CATEGORIES= benchmarks
MAINTAINER= dbaio@FreeBSD.org

2
benchmarks/sipp/Makefile
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@ -2,7 +2,7 @@
PORTNAME= sipp
PORTVERSION= 3.5.1
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= benchmarks net
MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}/releases/download/v${PORTVERSION}/

1
biology/bcftools/Makefile
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@ -2,6 +2,7 @@
PORTNAME= bcftools
PORTVERSION= 1.12
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

1
biology/gemma/Makefile
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@ -1,5 +1,6 @@
PORTNAME= gemma
DISTVERSION= 0.98.3
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

1
biology/viennarna/Makefile
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@ -1,5 +1,6 @@
PORTNAME= viennarna
DISTVERSION= 2.4.18
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/
DISTNAME= ViennaRNA-${DISTVERSION}

2
cad/graywolf/Makefile
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@ -1,7 +1,7 @@
PORTNAME= graywolf
DISTVERSION= 0.1.6-4
DISTVERSIONSUFFIX= -gf47937b
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= cad
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/

2
comms/gnuradio/Makefile
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@ -1,7 +1,7 @@
PORTNAME= gnuradio
DISTVERSIONPREFIX= v
DISTVERSION= 3.8.1.0
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= comms astro hamradio
MAINTAINER= hamradio@FreeBSD.org

1
devel/indi/Makefile
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@ -1,6 +1,7 @@
PORTNAME= indi
DISTVERSIONPREFIX= v
DISTVERSION= 1.9.0
PORTREVISION= 1
CATEGORIES= devel
MAINTAINER= acm@FreeBSD.org

2
editors/calligra/Makefile
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@ -1,6 +1,6 @@
PORTNAME= calligra
DISTVERSION= 3.2.1
PORTREVISION= 21
PORTREVISION= 22
CATEGORIES= editors kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
DIST_SUBDIR= KDE/${PORTNAME}

2
graphics/enblend/Makefile
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@ -2,7 +2,7 @@
PORTNAME= enblend
PORTVERSION= 4.2
PORTREVISION= 15
PORTREVISION= 16
CATEGORIES= graphics
MASTER_SITES= SF/enblend/enblend-enfuse/enblend-enfuse-${PORTVERSION}
DISTNAME= enblend-enfuse-${PORTVERSION}

2
graphics/inkscape/Makefile
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@ -2,7 +2,7 @@
PORTNAME= inkscape
PORTVERSION= 1.0.2
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES= graphics gnome
MASTER_SITES= https://media.inkscape.org/dl/resources/file/

1
graphics/ipe/Makefile
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@ -3,6 +3,7 @@
PORTNAME= ipe
PORTVERSION= 7.2.23
DISTVERSIONSUFFIX= -src
PORTREVISION= 1
CATEGORIES= graphics
MASTER_SITES= https://dl.bintray.com/otfried/generic/ipe/${PORTVERSION:R}/

2
graphics/krita/Makefile
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@ -1,6 +1,6 @@
PORTNAME= krita
DISTVERSION= 4.4.5
PORTREVISION= 16
PORTREVISION= 17
CATEGORIES= graphics kde
MASTER_SITES= KDE/stable/${PORTNAME}/${DISTVERSION}
DIST_SUBDIR= KDE/${PORTNAME}

2
graphics/luminance-qt5/Makefile
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@ -2,7 +2,7 @@
PORTNAME= luminance-hdr
DISTVERSION= 2.6.1.1
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= graphics
MASTER_SITES= SF/qtpfsgui/luminance/${DISTVERSION}

1
graphics/mandelbulber/Makefile
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@ -1,5 +1,6 @@
PORTNAME= mandelbulber
PORTVERSION= 2.25
PORTREVISION= 1
CATEGORIES= graphics
MAINTAINER= amdmi3@FreeBSD.org

2
graphics/nip2/Makefile
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@ -2,7 +2,7 @@
PORTNAME= nip2
PORTVERSION= 8.7.1
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= graphics
MASTER_SITES= https://github.com/libvips/${PORTNAME}/releases/download/v${PORTVERSION}/

2
graphics/pfstools/Makefile
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@ -2,7 +2,7 @@
PORTNAME= pfstools
DISTVERSION= 2.1.0
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= graphics
MASTER_SITES= SF

1
graphics/qgis-ltr/Makefile
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@ -3,6 +3,7 @@
PORTNAME= qgis
DISTVERSIONPREFIX= final-
DISTVERSION= 3_16_7
PORTREVISION= 1
CATEGORIES= graphics geography
PKGNAMESUFFIX= -ltr

2
graphics/qgis/Makefile
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@ -3,7 +3,7 @@
PORTNAME= qgis
DISTVERSIONPREFIX= final-
DISTVERSION= 3_18_3
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= graphics geography
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/

2
lang/algol68g/Makefile
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@ -1,6 +1,6 @@
PORTNAME= algol68g
PORTVERSION= 2.8.4
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= lang
MASTER_SITES= http://jmvdveer.home.xs4all.nl/

2
lang/newlisp/Makefile
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@ -2,7 +2,7 @@
PORTNAME= newlisp
PORTVERSION= 10.7.5
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= lang
MASTER_SITES= http://www.newlisp.org/downloads/

2
mail/bogofilter/Makefile
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@ -2,7 +2,7 @@
PORTNAME= bogofilter
DISTVERSION= 1.2.5
PORTREVISION?= 1
PORTREVISION?= 2
CATEGORIES?= mail
MASTER_SITES= SF/bogofilter/bogofilter-stable/

2
math/PDL/Makefile
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@ -2,7 +2,7 @@
PORTNAME= PDL
PORTVERSION= 2.019
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math perl5
MASTER_SITES= CPAN

1
math/R-cran-gsl/Makefile
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@ -2,6 +2,7 @@
PORTNAME= gsl
DISTVERSION= 2.1-6
PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}

2
math/asymptote/Makefile
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@ -2,7 +2,7 @@
PORTNAME= asymptote
PORTVERSION= 2.67
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}.src

1
math/deal.ii/Makefile
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@ -1,6 +1,7 @@
PORTNAME= deal.II
DISTVERSIONPREFIX= v
DISTVERSION= 9.3.0
PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri@FreeBSD.org

2
math/dieharder/Makefile
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@ -2,7 +2,7 @@
PORTNAME= dieharder
PORTVERSION= 3.31.1
PORTREVISION= 7
PORTREVISION= 8
CATEGORIES= math
MASTER_SITES= http://www.phy.duke.edu/~rgb/General/dieharder/ LOCAL/bf

2
math/freefem++/Makefile
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@ -3,7 +3,7 @@
PORTNAME= freefem++
PORTVERSION= 4.6
DISTVERSIONPREFIX= v
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= math science
MAINTAINER= kh@mogami.com

2
math/giacxcas/Makefile
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@ -2,7 +2,7 @@
PORTNAME= giacxcas
DISTVERSION= 1.6.0-7
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= http://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/:giac \
http://cocoa.dima.unige.it/cocoalib/tgz/:cocoa \

2
math/gsl/Makefile
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@ -1,7 +1,7 @@
# Created by: Andrew L. Neporada <andrew@chg.ru>
PORTNAME= gsl
PORTVERSION= 2.6
PORTVERSION= 2.7
CATEGORIES= math
MASTER_SITES= GNU

6
math/gsl/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1566551853
SHA256 (gsl-2.6.tar.gz) = b782339fc7a38fe17689cb39966c4d821236c28018b6593ddb6fd59ee40786a8
SIZE (gsl-2.6.tar.gz) = 7398548
TIMESTAMP = 1622878012
SHA256 (gsl-2.7.tar.gz) = efbbf3785da0e53038be7907500628b466152dbc3c173a87de1b5eba2e23602b
SIZE (gsl-2.7.tar.gz) = 7508761

3
math/gsl/pkg-plist
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@ -266,10 +266,11 @@ include/gsl/gsl_vector_ushort.h
include/gsl/gsl_version.h
include/gsl/gsl_wavelet.h
include/gsl/gsl_wavelet2d.h
include/gsl/test_source.c
lib/libgsl.a
lib/libgsl.so
lib/libgsl.so.25
lib/libgsl.so.25.0.0
lib/libgsl.so.25.1.0
lib/libgslcblas.a
lib/libgslcblas.so
lib/libgslcblas.so.0

2
math/labplot/Makefile
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@ -2,7 +2,7 @@
PORTNAME= labplot
DISTVERSION= 2.8.2
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= math kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}

2
math/mathgl/Makefile
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@ -1,6 +1,6 @@
PORTNAME= mathgl
DISTVERSION= 2.4.4
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= math graphics
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/

2
math/ocamlgsl/Makefile
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@ -3,7 +3,7 @@
PORTNAME= ocaml-gsl
DISTVERSIONPREFIX=v
DISTVERSION= 1.19.1
PORTREVISION= 4
PORTREVISION= 5
CATEGORIES= math
MAINTAINER= michipili@gmail.com

2
math/octave-forge-gsl/Makefile
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@ -2,7 +2,7 @@
PORTNAME= octave-forge-gsl
PORTVERSION= 2.1.1
PORTREVISION= 8
PORTREVISION= 9
CATEGORIES= math
MAINTAINER= stephen@FreeBSD.org

2
math/oleo/Makefile
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@ -2,7 +2,7 @@
PORTNAME= oleo
PORTVERSION= 1.99.16
PORTREVISION= 13
PORTREVISION= 14
CATEGORIES= math
MASTER_SITES= GNU

2
math/orpie/Makefile
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@ -2,7 +2,7 @@
PORTNAME= orpie
PORTVERSION= 1.5.2
PORTREVISION= 5
PORTREVISION= 6
CATEGORIES+= math
MASTER_SITES= GENTOO http://pessimization.com/software/orpie/

1
math/p5-Math-GSL/Makefile
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@ -2,6 +2,7 @@
PORTNAME= Math-GSL
PORTVERSION= 0.42
PORTREVISION= 1
CATEGORIES= math perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-

6
math/p5-Math-GSL/files/patch-inc-GSLBuilder.pm
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@ -1,6 +1,6 @@
--- inc/GSLBuilder.pm.orig 2018-12-10 17:11:25 UTC
--- inc/GSLBuilder.pm.orig 2020-06-12 22:07:37 UTC
+++ inc/GSLBuilder.pm
@@ -262,7 +262,7 @@ sub link_c {
@@ -279,7 +279,7 @@ sub link_c {
}
}
@ -9,7 +9,7 @@
my @shrp = $self->split_like_shell($cf->{shrpenv});
my @ld = $self->split_like_shell($cf->{ld} || $Config{cc});
@@ -294,7 +294,7 @@ sub compile_c {
@@ -311,7 +311,7 @@ sub compile_c {
$cf->{installarchlib} = $Config{archlib};

11
math/p5-Math-GSL/files/patch-inc_Ver2Func.pm Normal file
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@ -0,0 +1,11 @@
--- inc/Ver2Func.pm.orig 2021-06-16 17:58:11 UTC
+++ inc/Ver2Func.pm
@@ -397,6 +397,8 @@ my @ver2func = (
^gsl_matrix_uint_scale_columns$
/
]
+ },
+ "2.7" => {
}
);

1
math/py-cvxopt/Makefile
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@ -1,5 +1,6 @@
PORTNAME= cvxopt
DISTVERSION= 1.2.6
PORTREVISION= 1
CATEGORIES= math python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
math/py-pygsl/Makefile
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@ -3,7 +3,7 @@
PORTNAME= pygsl
PORTVERSION= 2.3.0
DISTVERSIONSUFFIX= .1
PORTREVISION= 6
PORTREVISION= 7
CATEGORIES= math python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

1
math/py-pygslodeiv2/Makefile
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@ -1,5 +1,6 @@
PORTNAME= pygslodeiv2
DISTVERSION= 0.9.4
PORTREVISION= 1
CATEGORIES= math python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

2
math/rubygem-rb-gsl/Makefile
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@ -2,7 +2,7 @@
PORTNAME= gsl
PORTVERSION= 2.1.0.2
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= math rubygems
MASTER_SITES= RG
PKGNAMEPREFIX= rubygem-rb-

2
math/sage/Makefile
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@ -2,7 +2,7 @@
PORTNAME= sage
PORTVERSION= 9.2
PORTREVISION= 15
PORTREVISION= 16
CATEGORIES= math
MASTER_SITES= https://mirrors.xmission.com/sage/src/ \
http://mirrors.xmission.com/sage/src/ \

1
misc/visp/Makefile
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@ -1,5 +1,6 @@
PORTNAME= visp
DISTVERSION= 3.4.0
PORTREVISION= 1
CATEGORIES= misc
MASTER_SITES= https://visp-doc.inria.fr/download/releases/

1
net/ns3/Makefile
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@ -1,5 +1,6 @@
PORTNAME= ns3
PORTVERSION= 3.33
PORTREVISION= 1
CATEGORIES= net education
MASTER_SITES= https://www.nsnam.org/release/
DISTNAME= ns-allinone-${PORTVERSION}

1
science/afni/Makefile
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@ -1,6 +1,7 @@
PORTNAME= afni
DISTVERSIONPREFIX= AFNI_
DISTVERSION= 21.1.12
PORTREVISION= 1
CATEGORIES= science biology graphics perl5 python
MAINTAINER= fernape@FreeBSD.org

2
science/antioch/Makefile
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@ -2,7 +2,7 @@ PORTNAME= antioch
DISTVERSIONPREFIX= v
DISTVERSION= 0.4.0-156
DISTVERSIONSUFFIX= -g90ffa43
PORTREVISION= 9
PORTREVISION= 10
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

2
science/dakota/Makefile
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@ -1,6 +1,6 @@
PORTNAME= dakota
DISTVERSION= 6.13.0
PORTREVISION= 2
PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/

1
science/erkale/Makefile
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@ -1,5 +1,6 @@
PORTNAME= erkale
DISTVERSION= g20210215
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

2
science/fisicalab/Makefile
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@ -1,6 +1,6 @@
PORTNAME= fisicalab
PORTVERSION= 0.3.3
PORTREVISION= 12
PORTREVISION= 13
CATEGORIES= science education gnustep
MASTER_SITES= SAVANNAH

1
science/getdp/Makefile
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@ -2,6 +2,7 @@
PORTNAME= getdp
PORTVERSION= 3.3.0
PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://www.geuz.org/getdp/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source

2
science/gnudatalanguage/Makefile
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@ -4,7 +4,7 @@ PORTNAME= gnudatalanguage
PORTVERSION= 1.0.0
DISTVERSIONPREFIX= v
DISTVERSIONSUFFIX= -rc.3
PORTREVISION= 3
PORTREVISION= 4
CATEGORIES= science lang
.if defined(BUILD_PYTHON_MODULE)
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

1
science/jdftx/Makefile
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@ -1,6 +1,7 @@
PORTNAME= jdftx
DISTVERSIONPREFIX= v
DISTVERSION= 1.6.0
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri@FreeBSD.org

1
science/kst2/Makefile
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@ -2,6 +2,7 @@
PORTNAME= kst
DISTVERSION= ${KST_VERSION}.${KST_DATE}
PORTREVISION= 1
CATEGORIES= science
MAINTAINER= makc@FreeBSD.org

1
science/nest/Makefile
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@ -1,6 +1,7 @@
PORTNAME= nest
DISTVERSIONPREFIX= v
DISTVERSION= 2.20.1
PORTREVISION= 1
CATEGORIES= science biology # NEST is used in neuroscience
MAINTAINER= yuri@FreeBSD.org

1
science/octopus/Makefile
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@ -1,5 +1,6 @@
PORTNAME= octopus
DISTVERSION= 10.3
PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= https://octopus-code.org/download/${DISTVERSION}/

2
science/scidavis/Makefile
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@ -1,6 +1,6 @@
PORTNAME= scidavis
PORTVERSION= 2.4.0
PORTREVISION= 1
PORTREVISION= 2
CATEGORIES= science
MAINTAINER= makc@FreeBSD.org

1
science/step/Makefile
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@ -1,5 +1,6 @@
PORTNAME= step
DISTVERSION= ${KDE_APPLICATIONS_VERSION}
PORTREVISION= 1
CATEGORIES= science education kde kde-applications
MAINTAINER= kde@FreeBSD.org