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biology/fasda: Update to 0.1.4

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Add --debug
Replace --map-gene with --feature-type for more flexibility
Use extended REs for gff3 feature selection (default = RNA$|transcript$|gene_segment$, same as transcript in GTF)
Add --output-dir
Support |-separated ID aliases (report last alias)
Support outsourcing abundance calculation (default = stringtie)
Several bug fixes and minor enhancements

Changes: https://github.com/auerlab/fasda/releases
This commit is contained in:
Jason W. Bacon 2023-08-11 15:39:06 -05:00
parent c978aad1b0
commit 67773b0db3
2 changed files with 5 additions and 4 deletions
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3
biology/fasda/Makefile
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@ -1,5 +1,5 @@
PORTNAME= fasda
DISTVERSION= 0.1.3
DISTVERSION= 0.1.4
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@ -10,6 +10,7 @@ LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
LIB_DEPENDS= libxtend.so:devel/libxtend libbiolibc.so:biology/biolibc
RUN_DEPENDS= stringtie>0:biology/stringtie
USES= localbase
USE_GITHUB= yes

6
biology/fasda/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1686347287
SHA256 (auerlab-fasda-0.1.3_GH0.tar.gz) = 1e1fb36327b63c53cd4286dbd6edfd89cf2bdc0899fe8d8b748b01fbb1d91d47
SIZE (auerlab-fasda-0.1.3_GH0.tar.gz) = 59513
TIMESTAMP = 1691756858
SHA256 (auerlab-fasda-0.1.4_GH0.tar.gz) = 8e1b1536ff3c551c16b6ddca543378343e055a9b067ef5038e2b2f1fb2e874b9
SIZE (auerlab-fasda-0.1.4_GH0.tar.gz) = 65254