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Code Issues Releases Activity

biology/vsearch: Update to 2.13.4

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FreeBSD patches incorporated into new upstream release

Reported by:    portscout
This commit is contained in:
Jason W. Bacon 2019-05-11 13:42:33 +00:00
parent b907bb445a
commit 75055f8a7f
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=501259
4 changed files with 4 additions and 91 deletions
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2
biology/vsearch/Makefile
View File

@ -2,7 +2,7 @@
PORTNAME= vsearch
DISTVERSIONPREFIX= v
DISTVERSION= 2.13.3
DISTVERSION= 2.13.4
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org

6
biology/vsearch/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1557339663
SHA256 (torognes-vsearch-v2.13.3_GH0.tar.gz) = e5f34ece28b76403d3ba4a673eca41178fe399c35a1023dbc87d0c0da5efaa52
SIZE (torognes-vsearch-v2.13.3_GH0.tar.gz) = 233846
TIMESTAMP = 1557579514
SHA256 (torognes-vsearch-v2.13.4_GH0.tar.gz) = 35269cbb10d1d2c33fdddd47ff4a5434eda1d4445fcc816bf4c57d7fe4740709
SIZE (torognes-vsearch-v2.13.4_GH0.tar.gz) = 234364

20
biology/vsearch/files/patch-src_city.cc
View File

@ -1,20 +0,0 @@
$NetBSD$
# Portability
--- src/city.cc.orig 2019-04-30 11:57:32 UTC
+++ src/city.cc
@@ -60,6 +60,13 @@ static uint32 UNALIGNED_LOAD32(const char *p) {
#define bswap_32(x) OSSwapInt32(x)
#define bswap_64(x) OSSwapInt64(x)
+#elif defined(__FreeBSD__)
+
+#include <sys/endian.h>
+
+#define bswap_32(x) bswap32(x)
+#define bswap_64(x) bswap64(x)
+
#elif defined(__NetBSD__)
#include <sys/types.h>

67
biology/vsearch/files/patch-src_vsearch.h
View File

@ -1,67 +0,0 @@
$NetBSD$
# Add FreeBSD and NetBSD support
--- src/vsearch.h.orig 2019-04-30 11:57:32 UTC
+++ src/vsearch.h
@@ -138,30 +138,50 @@
#define bswap_32(x) _byteswap_ulong(x)
#define bswap_64(x) _byteswap_uint64(x)
-#else
+#elif defined(__APPLE__)
-#ifdef __APPLE__
-
#define PROG_OS "macos"
#include <sys/sysctl.h>
#include <libkern/OSByteOrder.h>
+#include <sys/resource.h>
#define bswap_16(x) OSSwapInt16(x)
#define bswap_32(x) OSSwapInt32(x)
#define bswap_64(x) OSSwapInt64(x)
-#else
+#elif defined(__linux__)
-#ifdef __linux__
#define PROG_OS "linux"
-#else
-#define PROG_OS "unknown"
-#endif
-
#include <sys/sysinfo.h>
#include <byteswap.h>
+#include <sys/resource.h>
-#endif
+#elif defined(__FreeBSD__)
+#define PROG_OS "freebsd"
+#include <sys/sysinfo.h>
+#include <sys/resource.h>
+#include <sys/endian.h>
+#define bswap_16(x) bswap16(x)
+#define bswap_32(x) bswap32(x)
+#define bswap_64(x) bswap64(x)
+
+#elif defined(__NetBSD__)
+
+#define PROG_OS "netbsd"
+#include <sys/resource.h>
+#include <sys/types.h>
+#include <sys/bswap.h>
+#define bswap_16(x) bswap16(x)
+#define bswap_32(x) bswap32(x)
+#define bswap_64(x) bswap64(x)
+// Alters behavior, but NetBSD 7 does not have getopt_long_only()
+#define getopt_long_only getopt_long
+
+#else // Other Unix
+
+#define PROG_OS "unknown"
+#include <sys/sysinfo.h>
+#include <byteswap.h>
#include <sys/resource.h>
#endif