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Code Issues Releases Activity

- SBU_FILES += pkg-message

Browse Source 
PR:             ports/142409
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
This commit is contained in:
Philip M. Gollucci 2010-01-08 01:30:20 +00:00
parent 45d6e0e3c2
commit 8086ac7032
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=247371
4 changed files with 54 additions and 56 deletions
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3
biology/wise/Makefile
View File

@ -17,6 +17,7 @@ COMMENT= Intelligent algorithms for DNA searches
WRKTOP= ${WRKDIR}/${DISTNAME}
WRKSRC= ${WRKTOP}/src
MAKEFILE= makefile
SUB_FILES= pkg-message
#
# Actually want an 'ALL_TARGET = all perl' which then requires
@ -90,6 +91,6 @@ do-install:
.endif
post-install:
@${SED} -E -e 's#PREFIX#${PREFIX}#' -e '/(^\[|]$$)/d' ${PKGMESSAGE}
@${CAT} ${PKGMESSAGE}
.include <bsd.port.mk>

12
biology/wise/files/pkg-message.in Normal file
View File

@ -0,0 +1,12 @@
Welcome to Wise2.2
You must set your WISECONFIGDIR to the config directory before
using the programs:
in (t)csh: setenv WISECONFIGDIR %%PREFIX%%/share/wise/
in (ba)sh: export WISECONFIGDIR=%%PREFIX%%/share/wise/
To try an example:
cd %%PREFIX%%/share/examples/wise
genewise road.pep human.genomic

15
biology/wise/pkg-message
View File

@ -1,15 +0,0 @@
Welcome to Wise2.2
You must set your WISECONFIGDIR to the config directory before
using the programs:
in (t)csh: setenv WISECONFIGDIR PREFIX/share/wise/
in (ba)sh: export WISECONFIGDIR=PREFIX/share/wise/
To try an example:
cd PREFIX/share/examples/wise
genewise road.pep human.genomic
[Replace 'PREFIX' above with the actual installation prefix,
which by default is '/usr/local'.]

80
biology/wise/pkg-plist
View File

@ -10,44 +10,44 @@ bin/genomewise
%%PORTDOCS%%%%DOCSDIR%%/wise2.tex
%%PORTDOCS%%%%DOCSDIR%%/wise2api.tex
%%PORTDOCS%%%%DOCSDIR%%/wise3arch.tex
%%PORTDOCS%%share/examples/wise/README
%%PORTDOCS%%share/examples/wise/db.hmm
%%PORTDOCS%%share/examples/wise/hn_est.fa
%%PORTDOCS%%share/examples/wise/human.genomic
%%PORTDOCS%%share/examples/wise/keratin_intron.human
%%PORTDOCS%%share/examples/wise/keratin_intron.mouse
%%PORTDOCS%%share/examples/wise/pep.fa
%%PORTDOCS%%share/examples/wise/road.pep
%%PORTDOCS%%share/examples/wise/rrm.HMM
%%PORTDOCS%%share/examples/wise/vav.dna
%%PORTDOCS%%share/examples/wise/xeno.cdna
%%PORTDOCS%%share/examples/wise/xeno.pep
share/wise/BLOSUM30.bla
share/wise/BLOSUM45.bla
share/wise/BLOSUM62.bla
share/wise/BLOSUM80.bla
share/wise/aa.rnd
share/wise/blosum30.bla
share/wise/blosum62.bla
share/wise/cb.tmf
share/wise/codon.table
share/wise/gene.stat
share/wise/gon120.bla
share/wise/gon160.bla
share/wise/gon200.bla
share/wise/gon250.bla
share/wise/gon350.bla
share/wise/human.gf
share/wise/human.gp
share/wise/human.stats
share/wise/idenity.bla
share/wise/methods
share/wise/pb.gf
share/wise/pombe.gf
share/wise/tm.pri
share/wise/wise.2
share/wise/wise.per
share/wise/worm.gf
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/db.hmm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hn_est.fa
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/human.genomic
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/keratin_intron.human
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/keratin_intron.mouse
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pep.fa
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/road.pep
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/rrm.HMM
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vav.dna
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xeno.cdna
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/xeno.pep
%%DATADIR%%/BLOSUM30.bla
%%DATADIR%%/BLOSUM45.bla
%%DATADIR%%/BLOSUM62.bla
%%DATADIR%%/BLOSUM80.bla
%%DATADIR%%/aa.rnd
%%DATADIR%%/blosum30.bla
%%DATADIR%%/blosum62.bla
%%DATADIR%%/cb.tmf
%%DATADIR%%/codon.table
%%DATADIR%%/gene.stat
%%DATADIR%%/gon120.bla
%%DATADIR%%/gon160.bla
%%DATADIR%%/gon200.bla
%%DATADIR%%/gon250.bla
%%DATADIR%%/gon350.bla
%%DATADIR%%/human.gf
%%DATADIR%%/human.gp
%%DATADIR%%/human.stats
%%DATADIR%%/idenity.bla
%%DATADIR%%/methods
%%DATADIR%%/pb.gf
%%DATADIR%%/pombe.gf
%%DATADIR%%/tm.pri
%%DATADIR%%/wise.2
%%DATADIR%%/wise.per
%%DATADIR%%/worm.gf
bin/dba
bin/dnal
bin/estwise
@ -57,5 +57,5 @@ bin/genewisedb
bin/psw
bin/pswdb
%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTDOCS%%@dirrm share/examples/wise
@dirrm share/wise
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
%%PORTDATA%%@dirrm %%DATADIR%%