mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-11-27 00:57:50 +00:00
Code Issues Releases Activity

- Update to 0.5.1

Browse Source 
Obtained from:	FreeBSD Haskell
This commit is contained in:
Gabor Pali 2012-02-13 05:20:41 +00:00
parent b39ae7b761
commit 80cfee18ce
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=291221
5 changed files with 16 additions and 10 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
science/hs-bio/Makefile
View File

@ -6,7 +6,7 @@
#
PORTNAME= bio
PORTVERSION= 0.5.0.1
PORTVERSION= 0.5.1
CATEGORIES= science haskell
MAINTAINER= haskell@FreeBSD.org
@ -17,9 +17,7 @@ LICENSE= LGPL21
CABAL_SETUP= Setup.hs
USE_CABAL= binary>=0.4 mtl parallel parsec QuickCheck>=2 tagsoup>=0.8
EXECUTABLE= fastout flx frecover frename
PORTDATA= *
EXECUTABLE= fastout flx frecover frename flowclip orf rselect-pe
.include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk"
.include <bsd.port.mk>

4
science/hs-bio/distinfo
View File

@ -1,2 +1,2 @@
SHA256 (cabal/bio-0.5.0.1.tar.gz) = 0bb62961c38c4437fcfaaf08922d16a967681a3d244d4a9fc414538050cf662b
SIZE (cabal/bio-0.5.0.1.tar.gz) = 100323
SHA256 (cabal/bio-0.5.1.tar.gz) = 256e1b34fc0c7fd21b3ec36e1e3903bed2afc56b6a819f26d8368dbea21561a9
SIZE (cabal/bio-0.5.1.tar.gz) = 103846

6
science/hs-bio/files/patch-bio.cabal
View File

@ -1,11 +1,11 @@
--- ./bio.cabal.orig 2011-01-26 15:07:16.000000000 +0100
+++ ./bio.cabal 2011-03-13 15:52:53.711304695 +0100
--- ./bio.cabal.orig 2011-12-15 12:56:28.000000000 +0100
+++ ./bio.cabal 2011-12-17 11:02:26.000000000 +0100
@@ -38,7 +38,7 @@
Default: True
Library
- Build-Depends: base>=4 && <5, binary >=0.4 && <0.5, tagsoup>=0.8, bytestring >= 0.9.1,
+ Build-Depends: base>=4 && <5, binary >=0.4, tagsoup>=0.8, bytestring >= 0.9.1,
containers, array, parallel, parsec, mtl, directory
containers, array, parallel, parsec, mtl, directory, QuickCheck >= 2
Exposed-modules: Bio.Sequence,

8
science/hs-bio/files/patch-examples__RSelectPE.hs Normal file
View File

@ -0,0 +1,8 @@
--- ./examples/RSelectPE.hs.orig 2011-12-15 12:56:28.000000000 +0100
+++ ./examples/RSelectPE.hs 2011-12-17 11:46:58.000000000 +0100
@@ -1,5 +1,3 @@
-{- | Randomly select paired end (illumina) reads -}
-
import System.Environment (getArgs)
import Data.List (isSuffixOf)
import System.Random

2
science/hs-bio/pkg-descr
View File

@ -4,4 +4,4 @@ for building bioinformatics-related tools and utilities.
Current list of features includes: a Sequence data type supporting
protein and nucleotide sequences and conversion between them.
WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/
WWW: http://biohaskell.org/Libraries/Bio