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Add new port science/pyteomics:

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Pyteomics is a collection of lightweight and handy tools for Python
that help to handle various sorts of proteomics data.  Pyteomics
provides a growing set of modules to facilitate the most common
tasks in proteomics data analysis, such as:
 * calculation of basic physico-chemical properties of polypeptides:
   . mass and isotopic distribution
   . charge and pI
   . chromatographic retention time
 * access to common proteomics data:
   . MS or LC-MS data
   . FASTA databases
   . search engines output
 * easy manipulation of sequences of modified peptides and proteins

WWW: https://pypi.python.org/pypi/pyteomics
This commit is contained in:
Max Brazhnikov 2013-03-28 13:05:42 +00:00
parent 3fb0fe4a4a
commit 86a49b33b6
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=315466
5 changed files with 77 additions and 0 deletions
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1
science/Makefile
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@ -177,6 +177,7 @@
SUBDIR += pybrain
SUBDIR += pycdf
SUBDIR += pynn
SUBDIR += pyteomics
SUBDIR += qcl
SUBDIR += qtresistors
SUBDIR += ruby-dcl

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science/pyteomics/Makefile Normal file
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@ -0,0 +1,19 @@
# $FreeBSD$
PORTNAME= pyteomics
PORTVERSION= 2.1.3
CATEGORIES= science python
MASTER_SITES= CHEESESHOP/source/p/${PORTNAME}/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= makc@FreeBSD.org
COMMENT= Python modules for proteomics data analysis
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:${PORTSDIR}/devel/py-lxml \
${PYTHON_PKGNAMEPREFIX}matplotlib>=0:${PORTSDIR}/math/py-matplotlib \
${PYNUMPY}
USE_PYTHON= 2.6+
USE_PYDISTUTILS= yes
.include <bsd.port.mk>

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science/pyteomics/distinfo Normal file
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SHA256 (pyteomics-2.1.3.tar.gz) = 1986f5e7e090b7c8872293166219a50f60f475bd2802ad98c399160241f1fd52
SIZE (pyteomics-2.1.3.tar.gz) = 69609

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science/pyteomics/pkg-descr Normal file
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@ -0,0 +1,16 @@
Pyteomics is a collection of lightweight and handy tools for Python
that help to handle various sorts of proteomics data. Pyteomics
provides a growing set of modules to facilitate the most common
tasks in proteomics data analysis, such as:
* calculation of basic physico-chemical properties of polypeptides:
. mass and isotopic distribution
. charge and pI
. chromatographic retention time
* access to common proteomics data:
. MS or LC-MS data
. FASTA databases
. search engines output
* easy manipulation of sequences of modified peptides and proteins
WWW: https://pypi.python.org/pypi/pyteomics

39
science/pyteomics/pkg-plist Normal file
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@ -0,0 +1,39 @@
%%PYTHON_SITELIBDIR%%/pyteomics/__init__.py
%%PYTHON_SITELIBDIR%%/pyteomics/__init__.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/__init__.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/achrom.py
%%PYTHON_SITELIBDIR%%/pyteomics/achrom.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/achrom.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.py
%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.py
%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/fasta.py
%%PYTHON_SITELIBDIR%%/pyteomics/fasta.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/fasta.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/mass.py
%%PYTHON_SITELIBDIR%%/pyteomics/mass.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/mass.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/mgf.py
%%PYTHON_SITELIBDIR%%/pyteomics/mgf.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/mgf.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/mzid.py
%%PYTHON_SITELIBDIR%%/pyteomics/mzid.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/mzid.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/mzml.py
%%PYTHON_SITELIBDIR%%/pyteomics/mzml.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/mzml.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/parser.py
%%PYTHON_SITELIBDIR%%/pyteomics/parser.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/parser.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.py
%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.pyo
%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.py
%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.pyc
%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.pyo
@dirrmtry %%PYTHON_SITELIBDIR%%/pyteomics
@dirrmtry %%PYTHON_SITELIBDIR%%
@dirrmtry %%PYTHON_LIBDIR%%