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biology/ncbi-cxx-toolkit: update 27.0.0 → 28.0.0

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This commit is contained in:
Yuri Victorovich 2024-01-05 01:32:05 -08:00
parent d3a762b09a
commit 883c0d3b62
3 changed files with 6 additions and 17 deletions
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6
biology/ncbi-cxx-toolkit/Makefile
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@ -1,7 +1,6 @@
PORTNAME= ncbi-cxx-toolkit PORTNAME= ncbi-cxx-toolkit
DISTVERSIONPREFIX= release- DISTVERSIONPREFIX= release-
DISTVERSION= 27.0.0 DISTVERSION= 28.0.0
PORTREVISION= 1
CATEGORIES= biology science devel CATEGORIES= biology science devel
MAINTAINER= yuri@FreeBSD.org MAINTAINER= yuri@FreeBSD.org
@ -13,7 +12,8 @@ LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE
BROKEN_armv6= platform not defined for FreeBSD arm, see https://github.com/ncbi/ncbi-cxx-toolkit-public/issues/2 BROKEN_armv6= platform not defined for FreeBSD arm, see https://github.com/ncbi/ncbi-cxx-toolkit-public/issues/2
LIB_DEPENDS= libcdd.so:math/cddlib \ LIB_DEPENDS= libbz2.so:archivers/bzip2 \
libcdd.so:math/cddlib \
liblmdb.so:databases/lmdb \ liblmdb.so:databases/lmdb \
libpcre.so:devel/pcre \ libpcre.so:devel/pcre \
libunwind.so:devel/libunwind \ libunwind.so:devel/libunwind \

6
biology/ncbi-cxx-toolkit/distinfo
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@ -1,3 +1,3 @@
TIMESTAMP = 1687817071 TIMESTAMP = 1704429509
SHA256 (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = c8fb3f99c6fce4f170b381f3a7789c76a2ff1c23c094c9852e2e3de1fdc57277 SHA256 (ncbi-ncbi-cxx-toolkit-public-release-28.0.0_GH0.tar.gz) = f0300db41849bbaf690c1dfb9080f3e441fc617a004283acfb2b7b25b32ff885
SIZE (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = 57187775 SIZE (ncbi-ncbi-cxx-toolkit-public-release-28.0.0_GH0.tar.gz) = 57007980

11
biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app
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@ -1,11 +0,0 @@
--- src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app.orig 2023-06-26 23:22:57 UTC
+++ src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app
@@ -2,7 +2,7 @@
APP = pubmed_citmatch
SRC = pubmed_citmatch
-LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch $(SEQ_LIBS) \
+LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch seqset $(SEQ_LIBS) \
pubmed medlars pub medline biblio general xser xconnect xutil xncbi
LIBS = $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)