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biology/py-cutadapt: Upgrade to 2.1

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Add do-test target
This commit is contained in:
Jason W. Bacon 2019-03-24 21:20:24 +00:00
parent c6eceeb0ec
commit 88c39eb243
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=496783
2 changed files with 13 additions and 7 deletions
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14
biology/py-cutadapt/Makefile
View File

@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= cutadapt
PORTVERSION= 1.18
DISTVERSION= 2.1
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
@ -12,13 +12,19 @@ COMMENT= Trim adapters from high-throughput sequencing reads
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR}
BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.5.0:archivers/py-xopen@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}dnaio>=0.3:biology/py-dnaio@${PY_FLAVOR}
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR}
USES= python:3.4+
USE_PYTHON= autoplist concurrent distutils
USE_PYTHON= autoplist concurrent cython distutils
post-install:
@${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so
do-test:
@cd ${WRKSRC} && ${PYTHON_CMD} -m pytest
.include <bsd.port.mk>

6
biology/py-cutadapt/distinfo
View File

@ -1,3 +1,3 @@
TIMESTAMP = 1536508727
SHA256 (cutadapt-1.18.tar.gz) = 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9
SIZE (cutadapt-1.18.tar.gz) = 342050
TIMESTAMP = 1553346146
SHA256 (cutadapt-2.1.tar.gz) = 09fd222a27cc1eeb571633f2bd54442ea9d4ff668ef1f475fd9d5253a7d315ef
SIZE (cutadapt-2.1.tar.gz) = 264993